Pairwise Alignments

Query, 633 a.a., ATP-dependent RNA helicase from Pedobacter sp. GW460-11-11-14-LB5

Subject, 629 a.a., DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  373 bits (958), Expect = e-107
 Identities = 241/639 (37%), Positives = 351/639 (54%), Gaps = 38/639 (5%)

Query: 5   FQLLGISDDVVNAVKDLGFETPTPIQEQSIPVLLEGTNDFVGLAQTGTGKTAAFGLPLLE 64
           F  LG+   ++ A+ DLG+E P+PIQ + IP LL G  D +G+AQTG+GKTAAF LPLL 
Sbjct: 8   FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGG-RDVLGMAQTGSGKTAAFSLPLLN 66

Query: 65  LIDFKVNKPQALILCPTRELCLQIANDLKNFSKNVANAHVVAVYGGANIMQQLREIRQGV 124
            +D ++  PQ L+L PTREL +Q+A  + +FSK++   +VVA+YGG     QLR +RQG 
Sbjct: 67  NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126

Query: 125 QIVVATPGRMLDIIGRKAIDFTNVKYVVLDEADEMLNMGFQDDINDILSTTPDDKKTWLF 184
           QIVV TPGR+LD + R  +D + +  +VLDEADEML MGF +D+  I++  P+  +T LF
Sbjct: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186

Query: 185 SATMPAEVRRIAKNYMDNPVELTMGTKNTGNVNIEHEYYIVRARDKYAALKRIVDFNPEI 244
           SATMP  +RRI + +M  P E+ + +  T   +I   Y+ V    K  AL R ++     
Sbjct: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246

Query: 245 FAVVFCKTKLDTQDVAEHLIKDGYNADALHGDLSQQQRDKVMQRFRERNMQLLIATDVAA 304
            A++F +TK  T +VAE L + GYN+ AL+GD++Q  R++ ++R ++  + +LIATDVAA
Sbjct: 247 AAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306

Query: 305 RGIDVNNVTHVVNYSLPDEIESYTHRSGRTGRAGKTGISICIINSKELGKIRQLERIIGK 364
           RG+DV  ++ VVNY +P + ESY HR GRTGRAG+ G ++  + ++E   +R +ER +  
Sbjct: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366

Query: 365 QFTKAELPTGFDVCEKQLFSLVHKVHNVEVNNEQIDQY---IPRIMD--EFADLSKEDVI 419
              + ELP    + +++L     KV   ++ +  +DQY   + +I    E  +L  E + 
Sbjct: 367 TIPEVELPNAELLGKRRLEKFAAKVQQ-QLESSDLDQYRALLAKIQPSAEGEELDLETLA 425

Query: 420 KRFASL-EFNRFLDYYSKAP-----------DLNAAVGDDRG--ADRGERGGRGRGSEGY 465
                + +  R L     AP           D      +DRG   DR ER  R R   G 
Sbjct: 426 AALLKMAQGERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREERPRRERRDVGD 485

Query: 466 TRLF-INLGSVDEFTRGDMLSFICNNGKIGGKSVGKIDLKGVFSFFEVEDDVADKVFEGF 524
            +L+ I +G  D      ++  I N G I  + +G I L    S  E+   +  +V + F
Sbjct: 486 MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHF 545

Query: 525 KSVEFNGRQVRIEKSGDGGRGEGAGERRGGGERRSGGFGGERRSGGGGGYRGGGDRRSSG 584
                  + + ++  GD     G GERRGGG      F GERR    GG    G+RR  G
Sbjct: 546 TRTRILNKPMNMQLLGDAVPHAG-GERRGGGR----SFSGERRE---GGRNFSGERREGG 597

Query: 585 GGSGRREGGNSGGGFRDFSGRSRDDKGGNTGGPRREGGN 623
            G GRR  G      R+  G  RDD  G     RR GG+
Sbjct: 598 RGDGRRFSGER----RESRGPRRDDSTGR----RRFGGD 628