Pairwise Alignments

Query, 186 a.a., RNA polymerase sigma factor from Pedobacter sp. GW460-11-11-14-LB5

Subject, 182 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  176 bits (447), Expect = 2e-49
 Identities = 83/182 (45%), Positives = 129/182 (70%)

Query: 1   MKQVEDSEILAMFAVERTRNEAFNLLLKKYQQKIYWHIRRLVLNHDDCDDLLQEVFVKVW 60
           M  ++D+ +L +    +TR + + +L+  YQ++IY  IR++V+ H+D DDL+Q  FVK +
Sbjct: 1   MNLLDDTSLLKLINNPQTREKGYRMLVNHYQKRIYSIIRKMVIIHEDADDLVQNTFVKAF 60

Query: 61  KNLDKFRSDSQLYTWIYRIATNESITFLNKQKQRNNTPLDEVSSELADNLVASSYFNGDK 120
           KN++ F+ DS L+TW+YRIA NE + FL K+K+RN   L++   ++A  L ++ +  GD+
Sbjct: 61  KNINNFKRDSSLFTWLYRIAINECLNFLEKKKKRNFFRLEDHEHKMAGYLDSTLHIEGDE 120

Query: 121 LELKLQKAILTLPEKQRIIFNMKYFDDMKYEEISEVLGTSVGALKASFHIAAKKIEAFIT 180
           ++L LQK +L LP+KQR++FNMKYF+++ Y +ISE+  TS GALKAS+H A KKIE  I 
Sbjct: 121 IQLLLQKLLLKLPKKQRLVFNMKYFENLSYAQISEITKTSEGALKASYHHAVKKIENEIN 180

Query: 181 ND 182
            D
Sbjct: 181 PD 182