Pairwise Alignments

Query, 221 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 186 a.a., RNA polymerase sigma-70 factor from Phocaeicola dorei CL03T12C01

 Score = 73.9 bits (180), Expect = 2e-18
 Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 11/172 (6%)

Query: 28  DIKSFEQLYRFLYSRLIKFSVYYVVDKQVAEDLVAEVFVKCWENRSSSTHVLNPESYFFI 87
           D+ +F + +     R + F+  YV D+ VAED V E  +  WEN+   +   N  +Y   
Sbjct: 4   DLNAFNKFFIDYQQRFVHFACTYVHDEAVAEDFVVESMMYYWENKDRLSADTNIPAYVLT 63

Query: 88  AVKNQSLKYLKKNSAITFIDLVDE---------KDNISVSTHTPEYILETKELHQQLDQA 138
            +K++ + YL+      + D  DE            I        Y + TKE+ + +D+ 
Sbjct: 64  TIKHKCIDYLRHQQ--VYQDASDEIARIYAWELSGRIMTLEDFEPYEVFTKEIQEIVDRT 121

Query: 139 IAGLAPQAATVFRLIKESGMKYKEVAELLNISPRTVQTQLFRAIAKLRLVLQ 190
           +  L  Q   +F + +     +KE+AELL+I+ + V+  + +A   LRL L+
Sbjct: 122 LDALPEQTRKIFVMSRNENKSHKEIAELLDITTKGVEFHISKATRTLRLALK 173