Pairwise Alignments

Query, 665 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 561 a.a., SusD family. from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  103 bits (256), Expect = 3e-26
 Identities = 137/533 (25%), Positives = 215/533 (40%), Gaps = 96/533 (18%)

Query: 1   MKKIINII-SGVALLGSLMVFPTSCKKSFLDEEVINSRNTSDFQKTEGLDGLVIGMYQSL 59
           MKK I +  SG+ ++G L    + C + FLDEEV++S      +   G +  +IG+    
Sbjct: 5   MKKHIKLFFSGLCMMGVL----SGCGEDFLDEEVLDSYAPEVLKDELGFEAAIIGL---- 56

Query: 60  KFHFNYTWAYTSTN---------YGVD-EFTVGGDRTEQMWNSYD-GTLNSLNVDVQAVF 108
             H+ Y   +T+T+          G D  +   G         +D   LNS +   + ++
Sbjct: 57  --HYQYGTMFTTTDDQTIRGVWQLGTDIAWAPAGRSNGDARPHFDYAVLNSTDGAARKIW 114

Query: 109 DNMYTNINSANIVIKNV---PIY-YTGANKNIRLGEGYFMRAFDYFKLVKQYGGVPLQLE 164
            + Y  IN+ANI+I++    P+   T     +   EG F RA  Y  LV  +G VPL  E
Sbjct: 115 GSYYRLINNANILIQSTSGGPVAGVTEEEMAVFRAEGKFFRAIAYHNLVTHFGDVPLLTE 174

Query: 165 SLETIKEDFTRNSAKEVYEQVIQDFTQAYNLLPSV---PAERGRITKWAAAHFLAKAYLF 221
            L   K DF R    EV   + +D  +A   LP++   PA+ GR  K  A   LA+ YL 
Sbjct: 175 PLSAPKTDFVRTPVAEVDNIIEEDLLEAVEFLPNIGDAPAD-GRANKEMARQLLAEVYL- 232

Query: 222 RASEMNNDWNGDTKTADLQNA--IKYADLVIGSGQHSLATNYSDLWNFTTVDGANETNRE 279
               M  D   + +  ++ N   +       G   +     +SD++ +      ++ N E
Sbjct: 233 ---RMGEDAKAEAQCTEIINGGRLSLVRERYGVRANDPGDAFSDMFLYGN-QRRSQGNTE 288

Query: 280 VILAAQFSNNT-ATQGRYG-NQIHLYYPSIYQTLPGM-IRDIAGGREFQRMRSTDYAL-D 335
            I   +  N    T G  G  Q    + + Y  LPGM   D  GGR   RMR  ++ + D
Sbjct: 289 GIWVLEAENPADVTGGSSGAPQQRRVWVASYHDLPGMHPSDSTGGRGIARMRLNNWVVYD 348

Query: 336 VFDR--VNDSRFWKSFKTRYVSNNAASIPKWVKGSAPTPAQEGQPKFALGEEAVLYIVNN 393
           +++   + +S+F  S K     N+       ++G A    ++ +   + G    ++    
Sbjct: 349 LYEESDMRNSKF--SLKRTLYFNHPDERYDAIRGQAVPYGEDAEFTLSDGSSVKIF---- 402

Query: 394 AGDT--RYTPIVDKADPALPTDLARRKPSMFVRYFAGQPQSYLNAHGNYGVNQYVALSKF 451
           A DT  +Y P   K     P D                         N+G   +      
Sbjct: 403 AADTIYKYVPYTLKWGQYDPRD-------------------------NFGWGMW------ 431

Query: 452 MDGSRNLVASQFGQRDGILARLAETYLIAAEAYGRLGQYAQAIPYLNTVRDRA 504
                         +D IL RL ETYL+ AEA  + G    A   +N +RDRA
Sbjct: 432 --------------KDFILMRLGETYLLRAEARMKQGNLDGAAADINVLRDRA 470



 Score = 43.1 bits (100), Expect = 3e-08
 Identities = 31/68 (45%), Positives = 36/68 (52%), Gaps = 10/68 (14%)

Query: 589 FILDERSRELMGELMRWEDLARTKTLVART---------AAFNLE-AKPLEGKHYLRPIP 638
           FILDER REL+ E  R + L RT TLV R          A   LE    L G H L PIP
Sbjct: 484 FILDERVRELLAEENRRKTLVRTGTLVERAKRLTGDQPLAGGALETTNGLNGDHLLMPIP 543

Query: 639 QSFLDVLK 646
           Q+ +D+ K
Sbjct: 544 QTEIDLNK 551