Pairwise Alignments

Query, 568 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 557 a.a., SusD family. from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  164 bits (416), Expect = 7e-45
 Identities = 167/602 (27%), Positives = 254/602 (42%), Gaps = 112/602 (18%)

Query: 26  LIPSFFLASCKKGFLDREPLDSVTDISFWKTEEQLKLAANACYSNLR------NNNTIAM 79
           L+      +C +  LDR    + T+   + +   ++      YS+L          T+A 
Sbjct: 9   LLALLLACACVEDVLDRRMDTNYTEEQVFSSYTTIRNFGIGIYSHLPAGFDRFGGGTLAS 68

Query: 80  ENMGDNTIYP-PNSEYQAISAGNYDFTSGTLNSEWVNLYAAIRRCNHFLENYTKATNI-- 136
               D+ ++   + + Q ++ GN+   S   + +W NLY  IR+ N FLEN     N   
Sbjct: 69  AT--DDALHSGQDGQVQQLAHGNWGAFSNP-DDQWGNLYDGIRKANLFLENSVDFENTIL 125

Query: 137 --------------SATALAQYAGEVRFLRAFMYTYLIFLFGDVPLLSKTLDIGDEEVFG 182
                             L     E  FL+AF Y  L   +G+VP++ + LD+  E+V G
Sbjct: 126 RDTITEQGKQTYQTQVNDLGWLRAEAHFLKAFFYFELTKRYGEVPIIEEVLDL--EDVVG 183

Query: 183 -PRNKRAEVLEFVFADLDAAAAGLPTAYTAAD----LGRITKGAAFAWKARVALFF---- 233
             R    E ++ + ++L+ A  G+   +   D    LGR T GAA A K R+ L+     
Sbjct: 184 YERRPYGECVDHMLSELELAMEGMRDTWEGYDENRMLGRATTGAAMALKTRILLYAASPL 243

Query: 234 -------EKWSIAEAAAKSVMDLNVYQLYTAGGTAKCYNDLFTYKGKLAGGANKETILAR 286
                   KW  A  AA  V++   Y L+        Y +LF          N E IL+R
Sbjct: 244 HNPENDPSKWQSAARAAYEVINSGRYGLFDN------YGNLFR------SSDNTEIILSR 291

Query: 287 PNVAGVSVHNTSREIQVPDQTSRYSPTKSLVDAYLCIDGLPIDKSPLYSESTYADIFKNR 346
              A  S+  +   +         +P+++LVDAY  I+GL I +   Y        ++NR
Sbjct: 292 RYAASNSLERSMYPVGFTGALGGTNPSQNLVDAYQTINGLSITEDERYDPQ---HPYQNR 348

Query: 347 DPRMNQTILTPGGA--------WGGQDDGDADATTNPIFNTPKWNADKKGCITGTGFYFS 398
           DPR+  +ILT G +        W G  DG   A                   T TG+Y  
Sbjct: 349 DPRLKMSILTHGASYKGRPLEIWRGGLDGPGRARA-----------------TKTGYYQK 391

Query: 399 KYVEVAAVGTVSQDSNDIH---HIRYAEVLLTFAEARLE----QGT--LTQTDIDNTINK 449
           KYV+      + Q+   +H   + RY E+LL +AEA  E     GT  +        +N 
Sbjct: 392 KYVDENL--DLLQNRTSVHAWIYFRYGEILLNYAEAMNEVHGPDGTSEMMPWSAREALNA 449

Query: 450 LRDRVGMKRMVITELAAAGLD-LRTEIRRERRVELALEGQRYYDILRWKQG-DLLAQDVK 507
           LR R G+    +T   A G +  RT +R ERRVELA E  RY+D+ RW  G DL    V+
Sbjct: 450 LRARPGVGMPPVT---ADGKEAFRTMVRNERRVELAFEEHRYWDVRRWMTGMDLFNSAVR 506

Query: 508 GMKKSLVESFNQQYVATIATDANGYFVVNTGRKFVAPKNYLWPIPITQLQRNP-VLGQNP 566
           G++           V  I+ +      V    +F AP+  L+PI   ++ ++   L Q P
Sbjct: 507 GVQ-----------VEKISENEFSLEYVEVDDRFFAPQMNLYPIQADEINKSKGSLSQTP 555

Query: 567 GW 568
           GW
Sbjct: 556 GW 557