Pairwise Alignments

Query, 568 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 543 a.a., SusD family. from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  244 bits (623), Expect = 6e-69
 Identities = 183/548 (33%), Positives = 276/548 (50%), Gaps = 49/548 (8%)

Query: 40  LDREPLDSVTDISFWKTEEQLKLAANACYSNLRNNNTIAMENMGDNTIYP---PNSEYQA 96
           LD  P ++ TD+++W +  + +   N  YS + ++N         +  Y     N+   +
Sbjct: 25  LDLAPENTFTDLTYWTSAAKAESMLNTAYSQMFSSNRFFYNEGASDNAYNGRGDNAGAAS 84

Query: 97  ISAGNYDFTSGTLNSEWVNLYAAIRRCNHFLENYTKATNISATALAQYAGEVRFLRAFMY 156
           ++AG YD + G L S+W N Y+AI+ CN  LEN  +  +I      +   E RF+RA+ +
Sbjct: 85  LAAGTYDPSLGRLQSQWDNNYSAIKTCNILLENIDRVEDIDEGERERMKAEARFIRAYQH 144

Query: 157 TYLIFLFGDVPLLSKTLDIGDEEVFGPRNKRAEVLEFVFADLDAAAAGLPT--AYTAADL 214
             L+  FGDVPLL + + I D +    R  +++VLEF+ ++L+AA+  LPT      A+ 
Sbjct: 145 FQLMTWFGDVPLLDQDISIEDAQTIS-RTPKSQVLEFILSELEAASEVLPTQQELPEAER 203

Query: 215 GRITKGAAFAWKARVALFFEKWSIAEAAAKSVMDLNVYQLYTAGGTAKCYNDLFTYKGKL 274
           GRIT GAA A KARV L+  +W    A  + ++  N Y  Y   G    Y  LF  + + 
Sbjct: 204 GRITSGAAMALKARVHLYEGQWQEVVATTEPLIMGNEYGNY---GLFPAYEGLFMPENQY 260

Query: 275 AGGANKETILAR---PNVAGVSVHNTSREIQVPDQTSRYSPTKSLVDAYLCIDGLPI-DK 330
               ++E IL+    P +           +    + +  +PT+ LVD+YL  +GLPI D 
Sbjct: 261 ----SQEDILSLQYVPQLRTWGEFFDMAPLSAGARLNALAPTQELVDSYLMENGLPITDS 316

Query: 331 SPLYSESTYADIFKNRDPRMNQTILTPGGAWGGQDDGDADATTNPIFNTPKWNADKKGC- 389
           +  Y E+   D + +RDPR+  TI+     W  +D+GD    T+ I+  P  + D+    
Sbjct: 317 NAGYDEN---DPYDHRDPRLTATIVYHLYEW--EDNGD----THTIYIKPGTDPDESAAD 367

Query: 390 -------ITGTGFYFSKYVEVAAVGTVSQDSNDIHHIRYAEVLLTFAEARLEQGTLTQTD 442
                   T TG+Y  KY + +   T      ++  +RYA+VLL +AEA+ E   + Q  
Sbjct: 368 EYVPGSSSTTTGYYTRKYFDPSR-NTDFASGLNLMLLRYADVLLMYAEAKNELNQMDQAT 426

Query: 443 IDNTINKLRDRVGMKRMVITEL-AAAGLD-LRTEIRRERRVELALEGQRYYDILRWKQGD 500
            D TI  LR+R G +     +  A  G D LR  IR ERRVELA+EG R +DI RW+   
Sbjct: 427 WDQTIRALRERAGFEAPAALDFDADLGQDGLREVIRNERRVELAMEGLRVFDIRRWR--- 483

Query: 501 LLAQDVKGMKKSLVESFNQQYVATIATDANGYFVVNTGRKFVAPKNYLWPIPITQLQRNP 560
            +A+DV       +  +         ++ NGY  VN  R F   K+YLWPIP  +   NP
Sbjct: 484 -IAEDV-------LNGWAHGAQFGPPSEDNGYLRVNL-RSFDPAKHYLWPIPRDERNLNP 534

Query: 561 VLGQNPGW 568
            L QNPGW
Sbjct: 535 NLTQNPGW 542