Pairwise Alignments

Query, 568 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 593 a.a., SusD family. from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  239 bits (610), Expect = 2e-67
 Identities = 197/597 (32%), Positives = 278/597 (46%), Gaps = 85/597 (14%)

Query: 34  SCKKGFLDREPLDSVTDISFWKTEEQLKLAANACYSNLRNN-------NTIAMENMGDNT 86
           SC   F+DR PLD +TD +FWKT + L+L  N+ Y +           +T+A     +  
Sbjct: 17  SCNDEFMDRYPLDQITDENFWKTAQDLELYCNSFYPDYITGFGTGWGTSTVAPYGYNEAI 76

Query: 87  IY--------PPNSEYQAISAGNYDFT----SGTLNSEWVNLYAAIRRCNHFLENYTKAT 134
            Y         P S Y  ++A  Y+      SG+    W N    IR+ N+FL+NY K  
Sbjct: 77  AYGDVITDNAAPES-YSKVAANQYNAYVGGGSGSSGWSWGN----IRQLNYFLDNY-KRG 130

Query: 135 NISATALAQYAGEVRFLRAFMYTYLIFLFGDVPLLSKTLDIGDEEVFGPRNKRAEVLEFV 194
           N++      Y GEV F +A+ Y   +  FGDVP ++  L+   +E++ PR+ R  V++ +
Sbjct: 131 NVAEDVRNVYLGEVLFFKAWDYFKKVKTFGDVPWITHALETNSQELYAPRDPREVVMDSI 190

Query: 195 FADLDAAAAGLPTAYTAADLGRITKGAAFAWKARVALF---FEKWS-----------IAE 240
              LD + A LP A       R+ K  A   K+R+ L+   + K+             A 
Sbjct: 191 MHILDQSIAFLP-AKGEEKTDRLHKDVALHLKSRIGLYEGTYRKYHPELGLDGAAFLRAS 249

Query: 241 AAAKSVMDLNVYQLYTAGGTAKCYNDLF-TYKGKLAGGANKETILARPNVAGVSVHNTSR 299
           A A   +    Y LYT G     YNDLF TY  +     N E IL R   A ++      
Sbjct: 250 AEASEQLMAGGYSLYTTGNPTTDYNDLFATYSYE----DNPEVILWREYSADLTYGVAFS 305

Query: 300 EIQVPDQTSRYSPTKSLVDAYLCIDGLPIDKSPLY-SESTYADIFKNRDPRMNQTILTPG 358
                +   ++  T++LVD YLC DGLPI +SPL+  + +      NRDPR+ QT+   G
Sbjct: 306 RYYAQNLRHKHGATRNLVDEYLCEDGLPISQSPLFMGKDSIQSEMMNRDPRLPQTVANFG 365

Query: 359 GAWGGQDDGDADATTNPIFNTPKWNADKKGCITGTGFYFSKYV--EVAAVGTVSQDSNDI 416
                   G   A   P+ N P  N +K      TG+  +K+   + A    V+      
Sbjct: 366 TY--NLQAGVQGANNAPLPNIPGLNGNK----CPTGYRVAKWFLNDPADWDRVTNGMQAA 419

Query: 417 HHIRYAEVLLTFAEARLEQGTLTQTDIDNTINKLRDRVGMKRMVITELAA-AGLD----- 470
              RYAEVL+ +AEA+ E G L Q  +DNTIN +R RV M  + +  + A   LD     
Sbjct: 420 VIFRYAEVLVNYAEAKYELGELDQGVLDNTINLIRARVDMPPLTLGNIPADPALDGNYAM 479

Query: 471 --------LRTEIRRERRVELALEGQRYYDILRWKQGDLLAQDVKGMKKSLVESFNQQYV 522
                   +  EIRRERRVELA E  R+ D++RWK G  L   V+G+K      F Q+  
Sbjct: 480 YCDYVPEPVLREIRRERRVELAFESFRWDDLMRWKAGKFLEIPVEGIK------FVQEQF 533

Query: 523 ATIATD------ANGYFV-----VNTGRKFVAPKNYLWPIPITQLQRNPVLGQNPGW 568
            T+  D       +GY +     +  GR F   K YL+PIPI  L  N  L QNPGW
Sbjct: 534 PTVVVDKDVFLSEDGYILPYYQTLPDGRTFDEEKQYLFPIPIEDLVLNTNLEQNPGW 590