Pairwise Alignments

Query, 568 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 540 a.a., SusD family. from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  277 bits (709), Expect = 7e-79
 Identities = 192/549 (34%), Positives = 282/549 (51%), Gaps = 52/549 (9%)

Query: 40  LDREPLDSVTDISFWKTEEQLKLAANACYSNLRNNNTIAMENMGDNTIYPPNSEYQAISA 99
           ++R P   ++D +FW+ E  L+LA N  Y+ L +   +  +   D+      +   +IS 
Sbjct: 24  VNRLPETQLSDPAFWRNENDLELATNYLYTYLPSI-PVTSDVWSDDAF---GTSANSISD 79

Query: 100 GNYDFTSGTLNSEWVNLYAAIRRCNHFLENYTKA--TNISATALAQYAGEVRFLRAFMYT 157
           G     +   ++++ + Y+ IR  N+ +E   +A    +    + +Y  E +F RA+ Y 
Sbjct: 80  GTR--IAPATDNDYNSAYSLIRAANNIIEKSPRALENGVDPQVVDRYTAEAKFFRAWAYF 137

Query: 158 YLIFLFGDVPLLSKTLDIGDEEVFGPRNKRAEVLEFVFADLDAAAAGLP--TAYTAADLG 215
            L+  +GDVPL+  TL    EE++ P   RA+VL+ V+ DLD  A  LP  +  +  D G
Sbjct: 138 RLVKRYGDVPLILTTLSENAEELYAPAAPRADVLDVVYNDLDEGAQYLPAPSELSGGDYG 197

Query: 216 RITKGAAFAWKARVALFFEKWS-------------IAEAAAKSVMDLNVYQLYTAGGTAK 262
           R+T  AA A+K+RVALF    +             +A+ AA++ ++   + LY       
Sbjct: 198 RVTNTAALAFKSRVALFEGTRAKYHGYGDPAMHLRLAKEAAEACINSGEHTLYGE----- 252

Query: 263 CYNDLFTYKGKLAGGANKETILARPNVAGVSVHNTSREIQVPDQTSRYSPTKSLVDAYLC 322
            Y DLF Y G+  G  NKE IL +     VS    S   Q   +T   +PTK+L DAYL 
Sbjct: 253 -YFDLFQYVGE--GPGNKENILVKQYGVSVSESIVSHTSQRTLETGAANPTKALADAYLM 309

Query: 323 IDGLPIDKSPLYSE-STYADIFKNRDPRMNQTILTPGGAWGGQDDGDADATTNPIFNTPK 381
           +DGLP+DKSPLY+   +  ++F+NRDPRM  T    G  + G         T P+FN P 
Sbjct: 310 VDGLPMDKSPLYTNPESIMEVFQNRDPRMLDTFFKQGDEYIG---------TQPVFNVPN 360

Query: 382 WNADKKGCITGTGFYFSKYVEVAAVGTVSQDSNDIHHIRYAEVLLTFAEARLE-QGTLTQ 440
            +  +      TGF   +Y  +      S+   D   IRYAEVLL FAEA  E  G++T 
Sbjct: 361 LSFQR------TGFANRRYANLTDWQN-SRSYIDYTIIRYAEVLLNFAEATYELNGSITD 413

Query: 441 TDIDNTINKLRDRVGMKRMVITELAAAGLDLRTEIRRERRVELALEGQRYYDILRWKQG- 499
            ++D +IN LR R G+ ++     +A GLD+  EIRRERRVELALEG RY+D++RWK   
Sbjct: 414 DELDGSINLLRQRAGVAQLSNAFASANGLDMLAEIRRERRVELALEGFRYWDLMRWKTAE 473

Query: 500 DLLAQDVKGMKKSLVESFNQQYVATIATDANGYFVVNTGRKFVAPKNYLWPIPITQLQRN 559
           D+L Q V G      + +       +  D          R F   ++YLWP+PI +L  N
Sbjct: 474 DILPQSVLG--NYYYDEYGTDVTPNLTEDNIILLQAAENRSFDPDRDYLWPLPINELGLN 531

Query: 560 PVLGQNPGW 568
           P L QNP W
Sbjct: 532 PALEQNPNW 540