Pairwise Alignments
Query, 1001 a.a., diguanylate cyclase from Pedobacter sp. GW460-11-11-14-LB5
Subject, 1466 a.a., response regulator from Phocaeicola dorei CL03T12C01
Score = 109 bits (273), Expect = 1e-27
Identities = 122/535 (22%), Positives = 232/535 (43%), Gaps = 82/535 (15%)
Query: 311 VNQVIKDNNQNMWFATN-QGIYMLPNTNNRLSI---IDAESGLSSNVIKSITKDGKNRLW 366
++ ++ D N+W T+ +G+ + ++ I + L++N ++++ +D ++R+W
Sbjct: 407 LHSMLSDKQGNLWLCTHSKGLEKITFLGSQFHIYPRMGHSYDLNANTVRALFEDSEHRIW 466
Query: 367 LGTDDAVIDV----LTINNYQVDE----------IGLDDFKKYKTIKQITFDPKDQSIYF 412
+G D I++ L +E G+ + I K I
Sbjct: 467 MGKRDGQIEIYSSDLDFQGILTEEGIIAKSGRPLSGVPYHIMQDSRGNIWIATKGDGIIL 526
Query: 413 ASDYGMGV----FK----NIYNNS-NEVSYLKESNNSMFVIKHFSVGENNNQLALALSSG 463
A G FK +IY+ S N V +L E + + F G N +
Sbjct: 527 AEKEGAHFKFTRFKYDEDDIYSLSHNSVYWLHEDKHGRIWVATF--GGGLNYIQKTPEGK 584
Query: 464 VVFLSDRRNKFEFNAAKYREKEDFFKDRSY---HVFYDREGSLWFSNINGLSQFSKG--- 517
VF+S R N + F DR Y H+ D++G++W + +G F +
Sbjct: 585 YVFISSRNNL-----------KGFPYDRCYRVRHITSDKKGNIWVGSSDGALSFKEDFKD 633
Query: 518 --KLIKH-YENHP-----LLTKRINDIQQLADGTLILATDGYGL-----IFYKNNQITRQ 564
++ H Y P L + + + G + LAT G GL + + + +
Sbjct: 634 PESIVFHLYARIPDDMNCLSNNNVYRVVTTSQGEVYLATFGGGLNQLVSMNGEGGAVFKS 693
Query: 565 ITQKDGLTNNICTKIFVKNS-EIWVLTNKGVNKIADYPNQPTVANF---DYGKDLLSDDI 620
T K+GL ++I + ++ +W+ T G++K P++ N+ D+G + ++
Sbjct: 694 YTVKNGLPSDILLSVEEDDTGSLWISTENGLSKFI--PSEQRFENYNERDFGGKIRFEEG 751
Query: 621 NSLFIDDSTAYFATNKGLILFKYNNKNIVRNLPKVYVTSI-IKDNERLPVDQGNFTFETG 679
SL + ST F T++G++ F+ + +P + + ++ I + E +P G+ ++
Sbjct: 752 TSLNLSSSTILFGTSRGVLYFEPEHIKKSNYVPSIILGTLKISNQEVVPGVSGSLLRQSL 811
Query: 680 NNT-----------ILFTFSAVDFT-TSDITYRYRLNE-NSAW-VETRTRRLDFSSLQSG 725
NNT + +F+A+D +I Y YRL + W R R +++L G
Sbjct: 812 NNTEHLVLSHKENIVTLSFAALDMIYPENIRYAYRLRGFDKEWNYVDRQRTATYTNLPKG 871
Query: 726 DYVFEVSAKSQNGNWGESAK-IAFTIKKHFWQSLWFLSILILLVAYIFYKVAVYI 779
DYVF+V + + +G W E+ + + TI+ FW++ W ++I IL I + VYI
Sbjct: 872 DYVFQVKSTNSDGVWVENERSLRITIQPSFWETAWAMAIYILAFLLILFS-GVYI 925
Score = 53.1 bits (126), Expect = 1e-10
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 14/117 (11%)
Query: 64 YYILQDKKGFIWIATDNG---LSRFDGTNFQ--NFTIED----GLPDTQILQMREDKEGR 114
Y+I+QD +G IWIAT L+ +G +F+ F ++ L + + EDK GR
Sbjct: 505 YHIMQDSRGNIWIATKGDGIILAEKEGAHFKFTRFKYDEDDIYSLSHNSVYWLHEDKHGR 564
Query: 115 LWFFALNGQLSYLK---EGKFYNQDNDELLKKLNFNTV--IVSFLVDKSGRIWLGTN 166
+W G L+Y++ EGK+ + LK ++ + DK G IW+G++
Sbjct: 565 IWVATFGGGLNYIQKTPEGKYVFISSRNNLKGFPYDRCYRVRHITSDKKGNIWVGSS 621
Score = 49.7 bits (117), Expect = 2e-09
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 58 LASNNCYYILQDKKGFIWIATDNG-------LSRFDGTNFQNFTIEDGLPDTQILQMRED 110
L++NN Y ++ +G +++AT G ++ G F+++T+++GLP +L + ED
Sbjct: 652 LSNNNVYRVVTTSQGEVYLATFGGGLNQLVSMNGEGGAVFKSYTVKNGLPSDILLSVEED 711
Query: 111 KEGRLWFFALNGQLSYL-KEGKFYNQDNDELLKKLNF 146
G LW NG ++ E +F N + + K+ F
Sbjct: 712 DTGSLWISTENGLSKFIPSEQRFENYNERDFGGKIRF 748
Score = 49.3 bits (116), Expect = 2e-09
Identities = 102/456 (22%), Positives = 164/456 (35%), Gaps = 120/456 (26%)
Query: 109 EDKEGRLWFFALNGQLSYLKEGKFYNQDNDELLKKLN--------FNTVIVSFLVDKSGR 160
ED G LW G LS+ Y+++ + LL N F+ + S L DK G
Sbjct: 364 EDLNGNLWVHPQGGGLSW------YDREANRLLPFYNDPDSPDWHFSNKLHSMLSDKQGN 417
Query: 161 IWLGTNANLI--VCWDGKTIKKYI----SPNLNDKFINAFIHEDEQ--------GNIFAY 206
+WL T++ + + + G Y S +LN + A + E G I Y
Sbjct: 418 LWLCTHSKGLEKITFLGSQFHIYPRMGHSYDLNANTVRALFEDSEHRIWMGKRDGQIEIY 477
Query: 207 S-DLSVQKFNGKTFSMVSSKVQPLSYMTASNSSHRSLFYLDSGGLKQYRHGSINDLIPIP 265
S DL Q + +++ +PLS +P
Sbjct: 478 SSDLDFQGILTEE-GIIAKSGRPLS--------------------------------GVP 504
Query: 266 QNLIKNMSGYFYYDVKTKEVWLSNANGA------FALDKSGKTIQYLQDISVNQVIKDNN 319
+++++ G + K + L+ GA F D+ I L SV + +D +
Sbjct: 505 YHIMQDSRGNIWIATKGDGIILAEKEGAHFKFTRFKYDEDD--IYSLSHNSVYWLHEDKH 562
Query: 320 QNMWFATNQG--IYMLPNTNNRLSIIDAESGLSSNV------IKSITKDGKNRLWLGTDD 371
+W AT G Y+ + I + + L ++ IT D K +W+G+ D
Sbjct: 563 GRIWVATFGGGLNYIQKTPEGKYVFISSRNNLKGFPYDRCYRVRHITSDKKGNIWVGSSD 622
Query: 372 AVIDVLTINNYQVDEIGLDDFKKYKTIKQITFDPKDQSIYFASDYGMGVFKNIYNNSNEV 431
+ +DFK DP +SI F + N +N+N
Sbjct: 623 GALSF------------KEDFK----------DP--ESIVFHLYARIPDDMNCLSNNNVY 658
Query: 432 SYLKESNNSMFVIKHFSVGENNNQL-ALALSSGVVFLSDRRNKFEFNAAKYREKEDFFKD 490
+ S +++ + G NQL ++ G VF S Y K D
Sbjct: 659 RVVTTSQGEVYLA---TFGGGLNQLVSMNGEGGAVFKS------------YTVKNGLPSD 703
Query: 491 RSYHVFYDREGSLWFSNINGLSQFSKGKLIKHYENH 526
V D GSLW S NGLS+F + + +EN+
Sbjct: 704 ILLSVEEDDTGSLWISTENGLSKFIPSE--QRFENY 737
Score = 47.8 bits (112), Expect = 6e-09
Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 27 IAFLFGFIIFFLPKNLLAQTTYLPHYNTKSGLASNNCYYILQDKKGFIWIATDNGLSRFD 86
I F+ + FF K+ HY++++GL+ N+ ++QD G +W +T +G++RF+
Sbjct: 5 ILFILTLLFFFYAKS--QPNCIFTHYSSENGLSQNSIMSMVQDHNGVLWFSTWDGINRFN 62
Query: 87 GTNFQNFTIEDG 98
G +F+ + G
Sbjct: 63 GYDFKVYKARQG 74
Score = 46.6 bits (109), Expect = 1e-08
Identities = 88/435 (20%), Positives = 168/435 (38%), Gaps = 88/435 (20%)
Query: 49 LPHYNTKSGLA---SNNCYYILQDKKGFIWIAT-DNGLSR--FDGTNFQNFTIEDGLPDT 102
LP YN SN + +L DK+G +W+ T GL + F G+ F + D
Sbjct: 390 LPFYNDPDSPDWHFSNKLHSMLSDKQGNLWLCTHSKGLEKITFLGSQFHIYPRMGHSYDL 449
Query: 103 QILQMR---EDKEGRLWFFALNGQLS-YLKEGKFYNQDNDE-LLKKLN--FNTVIVSFLV 155
+R ED E R+W +GQ+ Y + F +E ++ K + V +
Sbjct: 450 NANTVRALFEDSEHRIWMGKRDGQIEIYSSDLDFQGILTEEGIIAKSGRPLSGVPYHIMQ 509
Query: 156 DKSGRIWLGTNANLIVCWDGK------TIKKYISPNLNDKFINA--FIHEDEQGNIFAYS 207
D G IW+ T + I+ + + T KY ++ N+ ++HED+ G I+
Sbjct: 510 DSRGNIWIATKGDGIILAEKEGAHFKFTRFKYDEDDIYSLSHNSVYWLHEDKHGRIW--- 566
Query: 208 DLSVQKFNGKTFSMVSSKVQPLSYMTASNSSHRSLFYLDSGGLKQYRHGSINDLIPIPQN 267
V F G L+Y+ + + +F LK + + + I +
Sbjct: 567 ---VATFGG-----------GLNYIQKTPEG-KYVFISSRNNLKGFPYDRCYRVRHITSD 611
Query: 268 LIKNMSGYFYYDVKTKEVWLSNANGAFALDKSGK---------------TIQYLQDISVN 312
K +W+ +++GA + + K + L + +V
Sbjct: 612 -------------KKGNIWVGSSDGALSFKEDFKDPESIVFHLYARIPDDMNCLSNNNVY 658
Query: 313 QVIKDNNQNMWFAT-NQGIYMLPNTNNRLSII----DAESGLSSNVIKSITKDGKNRLWL 367
+V+ + ++ AT G+ L + N + ++GL S+++ S+ +D LW+
Sbjct: 659 RVVTTSQGEVYLATFGGGLNQLVSMNGEGGAVFKSYTVKNGLPSDILLSVEEDDTGSLWI 718
Query: 368 GTDDAVIDVL----TINNYQVDEIGLDDFKKYKTIKQITFDPKDQSIYFASDYGMGVFKN 423
T++ + + NY + G K + + + + +I F + G+ F
Sbjct: 719 STENGLSKFIPSEQRFENYNERDFG----GKIRFEEGTSLNLSSSTILFGTSRGVLYF-- 772
Query: 424 IYNNSNEVSYLKESN 438
E ++K+SN
Sbjct: 773 ------EPEHIKKSN 781
Score = 32.3 bits (72), Expect = 2e-04
Identities = 59/290 (20%), Positives = 110/290 (37%), Gaps = 23/290 (7%)
Query: 354 IKSITKDGKNRLWLGTDDAVIDVLTINNYQVDE-IGLDDFKKYKTIKQITFDPKDQSIYF 412
I + D N+ WL TD+ ++ + V + + K +F +YF
Sbjct: 177 INQVFSDAYNQEWLLTDNGLLKITNDKEEPVSYFVNIQSGKDESVQAFYSFCSYGDELYF 236
Query: 413 ASDYGMGVFKNIYNNSNEVSYLKESNNSMFVIKHFSVGENNNQLALALSSGVVFLSDRRN 472
SD G Y+ NE+ L E VI + + A +++ SD +
Sbjct: 237 GSDRGR---IWCYSLQNEIFRLWELPVKDKVIAINEIKGTGLLITTAHEGLILYHSDTKE 293
Query: 473 KFEFNAAKYREKEDFFKDRSYHVFYDREGSLWFS--------NINGLSQFSKGKLIKHYE 524
+N + E F D V+ D + WF + N L++ K + ++
Sbjct: 294 CKVYNKSNCPE---FPADAFRSVYVDSKQEAWFEMTEWGKVCHFNPLTEVFKQEKMQVEP 350
Query: 525 NHPLLTKRINDIQQLADGTLILATDGYGLIFY--KNNQITRQITQKDG----LTNNICTK 578
+ I + +G L + G GL +Y + N++ D +N + +
Sbjct: 351 RGADRSYPSFHICEDLNGNLWVHPQGGGLSWYDREANRLLPFYNDPDSPDWHFSNKLHSM 410
Query: 579 IFVKNSEIWVLT-NKGVNKIADYPNQPTV-ANFDYGKDLLSDDINSLFID 626
+ K +W+ T +KG+ KI +Q + + DL ++ + +LF D
Sbjct: 411 LSDKQGNLWLCTHSKGLEKITFLGSQFHIYPRMGHSYDLNANTVRALFED 460
Score = 31.2 bits (69), Expect = 6e-04
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 90 FQNFTIEDGLPDTQILQMREDKEGRLWFFALNGQLSYL-KEGKFYNQDNDELLKKLNFNT 148
F +++ E+GL I+ M +D G LWF +G + + K Y + N
Sbjct: 25 FTHYSSENGLSQNSIMSMVQDHNGVLWFSTWDGINRFNGYDFKVYKARQGNKITMTNNRV 84
Query: 149 VIVSFLVDKSGRIWLGTNANLIVCWDGKTIK 179
++ VD IWL T + +D +T K
Sbjct: 85 DLLE--VDPYNYIWLQTYDYRVYRFDQRTEK 113
Score = 30.0 bits (66), Expect = 0.001
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Query: 306 LQDISVNQVIKDNNQNMWFATNQGIYMLPNTNNRLSIIDAESG----LSSNVIKSITKDG 361
L S+ +++D+N +WF+T GI + + A G +++N + + D
Sbjct: 34 LSQNSIMSMVQDHNGVLWFSTWDGINRFNGYD--FKVYKARQGNKITMTNNRVDLLEVDP 91
Query: 362 KNRLWLGTDDAVI---DVLTINNYQVDEIGLDDFKKYKTIK 399
N +WL T D + D T Q+ G ++ ++ +IK
Sbjct: 92 YNYIWLQTYDYRVYRFDQRTEKFEQIPAEGEEEGMRFSSIK 132
Score = 28.9 bits (63), Expect = 0.003
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 11/52 (21%)
Query: 345 AESGLSSNVIKSITKDGKNRLWLGTDDAVIDVLTINNYQVDEIGLDDFKKYK 396
+E+GLS N I S+ +D LW T D + N Y DFK YK
Sbjct: 30 SENGLSQNSIMSMVQDHNGVLWFSTWDG---INRFNGY--------DFKVYK 70