Pairwise Alignments

Query, 165 a.a., RNA polymerase subunit sigma-24 from Pedobacter sp. GW460-11-11-14-LB5

Subject, 183 a.a., RNA polymerase sigma factor from Phocaeicola dorei CL03T12C01

 Score = 87.8 bits (216), Expect = 9e-23
 Identities = 52/167 (31%), Positives = 92/167 (55%), Gaps = 9/167 (5%)

Query: 3   QKDKLFKEIFDSNSKKIFHLCYGYTGDTDAANDLLQETFLKVWQNLDKFRNKSLISTWIY 62
           ++ + F+ I +  S++++          + ANDLLQ TF+K W NL+ FR ++ +STW+Y
Sbjct: 18  RQKEAFECIVNEYSEQLYWQIRRMVLSHEDANDLLQNTFIKAWTNLEYFRAEAKMSTWLY 77

Query: 63  RIAVNTCLTYLRSEKRQAKDELT----DNIIENKVEE--FSEKNEQVALLYKCISKLEEN 116
           RIA+N CLT+L   K++A ++L+    D  + NK+E   +   +E   L  K +  L E 
Sbjct: 78  RIALNECLTFL--NKQRATNQLSIDDGDADMVNKLESDTYFNGDETQILFQKALLTLPEK 135

Query: 117 DRLIITM-VLDELPYHEIADISGISEGNLRVKIHRIKQKLTELYSQY 162
            R++  +    E+ Y ++++I G S G L+   H   +K+     +Y
Sbjct: 136 QRIVFNLKYFQEMKYEDMSEILGTSIGALKASYHHAVKKIENFLKEY 182