Pairwise Alignments

Query, 666 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 635 a.a., SusD family protein from Bacteroides ovatus ATCC 8483

 Score =  101 bits (251), Expect = 1e-25
 Identities = 112/463 (24%), Positives = 188/463 (40%), Gaps = 62/463 (13%)

Query: 5   LYFLLIISTGL---GSCKKFLATVPTDNLLPEEYYDSEAKLLNALAGVYYPLETSALYGN 61
           +Y  L +  GL    SC  FL       L  E  +++      AL  VY  L     Y N
Sbjct: 3   IYKTLFLGLGLIALSSCSDFLNQTSPSELDNESTFNNAYYTELALNKVYGSLTQDQTYSN 62

Query: 62  FL------SSDYNISDEAFYQRSAQTT--GVSVYNFDYSDASVAALWQQCYVGIERANML 113
           FL      ++D  + D      S  ++  G   YN +   + ++ +W   Y  IE AN++
Sbjct: 63  FLPIIAGTNTDCELIDGLGTDASNTSSERGNMNYNANPGWSQLSKVWDAMYGVIENANLV 122

Query: 114 IANINVANIAENKRAP------ILGEALFLRGYYYFLLASNYGDVPLKTLPTKSPSAEDV 167
           +  IN + + +   A          EA+ LR   YF L   +GD+P KT  + S    +V
Sbjct: 123 VDGINNSQLIQQAGATRTSMMRFRAEAMTLRAMIYFDLIRLFGDIPFKTESSNS-DLSNV 181

Query: 168 QVPRTPLKQVYAQILEDMTKAEGLTSKITDLGFSGR-VSKTTVEGILARVCLTMAGAPLK 226
            + +     +  +++ ++ +A G      + G++   VSK     +LA + +T AG  ++
Sbjct: 182 YIGKADRDDIMDELIIELEEAIGYLPWAGEDGYTTEHVSKGYAHALLANIAMTRAGYAIR 241

Query: 227 DESK--------------------------YADAKAWALKVKESGEHRLNPSYKQLF--V 258
           +++K                          +  A+     V  SG+H+LNPS ++ +  +
Sbjct: 242 EQAKDGYITGDNSDATYPTQRCSDTKRRELFELAEKHLAAVVSSGKHKLNPSVEEYWRLI 301

Query: 259 NMHQDLYDIKDSMWEVEFKGNGADGLGSNGRVGSLGGIQMQVATGIGLKIGYSYGFLHTT 318
           N+ Q     +++++E+        GL  +G +G   G ++  A+ +    G S G L  T
Sbjct: 302 NIGQLDQTYQENLFEIPM------GLNKSGELGYTIGYRINGASSLFGPKGNSSGKLKLT 355

Query: 319 AKLFNLFQPGDLRRDWNLAQFNYIATYPDRYYYNY---------YTAAQIYNRDAAKFRR 369
           A  +  F  GD+RRD   A          + +  Y         Y     Y +       
Sbjct: 356 APYYLSFGEGDIRRDLTCAISQLSTDKNTKVFKEYMLGNAPFGLYCGKWDYRKMMENSEW 415

Query: 370 EAYVLDNKNQNTTPINYPLLRYSDVLLMLAEAENHLNGPTALA 412
            A VL +  +  + IN   +RY  VLLM AE  N L G  A A
Sbjct: 416 YAAVLASDQKVCSGINVVKMRYPQVLLMYAEVVNELYGKGATA 458



 Score = 31.2 bits (69), Expect = 2e-04
 Identities = 18/46 (39%), Positives = 23/46 (50%)

Query: 576 SGLSQSSFQQAIEDERSRELCFEALRKPDLIRWGKWVETMNSIGAE 621
           + L    F  AI DE + EL  E +RK DLIRW    E ++    E
Sbjct: 488 TALMGKDFFDAIVDENAWELAGEGVRKFDLIRWNLLSEKIDEFKNE 533