Pairwise Alignments

Query, 584 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 564 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  139 bits (350), Expect = 3e-37
 Identities = 165/617 (26%), Positives = 263/617 (42%), Gaps = 99/617 (16%)

Query: 9   LSIVIILICFGSCKKDFLDKLPITDIAPQTFFKNEKDLELYCNGLYSLVPGAGIMTDDTQ 68
           ++++ +L     C K  LD  P+++ + + ++ +E ++ L  N LY        +  +T+
Sbjct: 5   IALIALLPLLLGCTK--LDVNPLSEGSSENWYSDETEITLALNDLYRTYLWDFEINYNTE 62

Query: 69  --SDNM-ETLPYDKVVAGEYLVPSTGGGWSWSY---------LRSVNYFLENYGKANA-A 115
             SDN  +    D   AG     S    WS S          +   N  L +   A    
Sbjct: 63  RMSDNWTQRQAIDAFPAG-----SVNSEWSRSEDLWLSTYKGITRANTILNSLDNATGKV 117

Query: 116 AEAK-NHYVGVARLFRAWFYFDKVKRFGNVPWYSGTMNINDEAQLYKPQDPRTLVMDSVL 174
           AEAK       A L RA FY   V  +G+VP+Y+G +NI+D  +L +    + +V+  V 
Sbjct: 118 AEAKIKQLAAEASLMRAVFYARLVFYYGDVPFYTGYLNIDDAFELGRTD--KEVVLQQVY 175

Query: 175 KDLDYASANIRTS--KTPLWTINRYVALSLKSRICLFEGTWRKYRGIADADRFLIAAKDA 232
           KD D A  ++  S     L    +  AL+ K+R  L+ G W             + A+DA
Sbjct: 176 KDFDAAIESLPVSYGSNELGRATKGAALAFKARAALYMGDW-------------VIARDA 222

Query: 233 AKKVIDEGGYSLYTTGKPDVDYLNLFAMSDAPQNEVIL--AYEYSTILNLRHAFSAESGA 290
           AK  +D   YSL+    P+     L    ++P+    L  ++E  +    ++ ++   G 
Sbjct: 223 AKACMDLQVYSLH----PNYGEYFLSKTRNSPETVFALPRSFELGSSWGAKNFYTRTPGG 278

Query: 291 YGRGFTK-EMVNSYLMKDGTPFTSVAGYATKTYMDEFENRDPRLIQTVL----------- 338
                   E+  +Y   DG P      +  +   + F+NRDPR   T++           
Sbjct: 279 SAVAQPSWELFCAYPCTDGLPIDESPLFNPR---EPFKNRDPRCAMTIVEFGTEHLGVIY 335

Query: 339 --NPLYTRTDRTDASKRFSPIPKIPGGTPTGY--LQVKFYQDDPIKEIYGQSDNDAPVIR 394
             NP  T+    +  K  +        T   Y  L +K   D+   +   ++D D  ++R
Sbjct: 336 NPNPYATKVLNMETEKMVANKDTRSVDTYASYNGLALKKGVDEDWSD-NNETDFDIRIMR 394

Query: 395 YAEVLLNYAEAMAELGTITQADLDLTINKLRDRVGMTGAAHLNMGVAIDPVLAAQYPDVS 454
           YA+VLL YAEA  EL  I  + LD  IN +R R              +D      YP ++
Sbjct: 395 YADVLLMYAEAQIELNEIDASVLD-AINAVRAR-----------AYGVDVTNTTAYPALT 442

Query: 455 SA----LILEIRRERRVELAGEGFRYSDILRWK-AGNLLAKKFYGIYFPGLGEYDLTK-- 507
           +     L  E+R ERR+E A E  R+ D+LRW+ A   L +  YGI  P     DL +  
Sbjct: 443 ATSQEQLRKELRNERRIEFAWENRRFDDLLRWRLAEKALIRPIYGILDPN----DLKQRV 498

Query: 508 -DGKLDFAIVAAIPAVKTPGVTYAVINKDIYLSNGNSGNIVPYPNQTKTFNENKNYLFPI 566
            D  L F   A       P +    +     L N  +  ++   N    F++ + YLFPI
Sbjct: 499 VDQNLWFYSQA-------PEIDENWLPDFSALHNAGTVKVLVERN----FDKERQYLFPI 547

Query: 567 PTSELLLNKNLIQNPGW 583
           P+ E+++NKNL QNP +
Sbjct: 548 PSKEIIINKNLKQNPNY 564