Pairwise Alignments

Query, 190 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 193 a.a., RNA polymerase sigma-70 factor from Phocaeicola dorei CL03T12C01

 Score = 70.1 bits (170), Expect = 2e-17
 Identities = 53/170 (31%), Positives = 90/170 (52%), Gaps = 6/170 (3%)

Query: 25  AFNELYDRYWKQVFNAAYKQIKDISSAQDITQDIFTQLWL-RDKDSKIENLSAYLFTAVR 83
           AF+++Y  Y K+++  + +  K    +++I Q++F +LW  R    + E L + LF   +
Sbjct: 23  AFDKIYQMYSKRLYAYSLQFTKSSEESEEIVQEVFVKLWSNRINIRQDETLRSLLFIMAK 82

Query: 84  NQSYKLMAKQKRSSPILD--VLMESEVSCYQADDQILYKEFLCAYEALIDNLPE-QQKII 140
           ++      +QK + PI +  +     +S      ++ Y EFL  +   I+ LP+ QQK+I
Sbjct: 83  HRLINAY-RQKINHPIYEEYIYHIDTLSTEDTHYKLEYNEFLFRFLKTIEKLPDTQQKVI 141

Query: 141 FKKRFNQGLNTLEISTQLCLSPKTVRNHLGRALAKLKTALLIILVLFMLV 190
              RF Q L+  EI+ +L LS +TV+N L   L  LK  L  I +L ML+
Sbjct: 142 RLSRFKQ-LSNKEIAEKLSLSEQTVKNQLSLGLKTLKEKLNKIWLLLMLL 190