Pairwise Alignments
Query, 937 a.a., uvrA paralog in Bacteroidetes (from data) from Pedobacter sp. GW460-11-11-14-LB5
Subject, 944 a.a., excinuclease ABC subunit A from Pseudomonas simiae WCS417
Score = 775 bits (2001), Expect = 0.0
Identities = 422/945 (44%), Positives = 603/945 (63%), Gaps = 42/945 (4%)
Query: 14 IIIKGARVHNLKNIDVAIPKNKLVVVTGMSGSGKSSLAFDTLYAEGQRRYVESLSSYARQ 73
I+I+GAR HNLKNID+ +P++KL+V+TG+SGSGKSSLAFDTLYAEGQRRYVESLS+YARQ
Sbjct: 4 ILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
Query: 74 FMGRMNKPDVDYIKGIAPAIAIEQKVITSNPRSTVGTSTEIYDYLKLLFSRIGKTISPVS 133
F+ M KPDVD I+G++PAI+IEQK + NPRSTVGT TEIYDYL+LL++R+G P
Sbjct: 64 FLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGIPRCPDH 123
Query: 134 GKEVKKDSVSTVVDYVNAMPEDTTVTIFCPLYPHNNRTIKEELAILLQKGFLRVLINDKI 193
++ +VS +VD V A PE + + P+ L +GF+R IN K+
Sbjct: 124 DIPLEAQTVSQMVDLVLAQPEGAKLMLLAPVIRERKGEHLSVFEELRAQGFVRARINGKL 183
Query: 194 EKIETVLDDADFKDAELTDDKTVQILIDRIVTNQEEETLSRLADSAQTAFFEGKGDCYV- 252
+ LD+A D + ++ +++DR + + RLA+S +TA G V
Sbjct: 184 YE----LDEAPKLDKQ--KKHSIDVVVDRFKVRADLQ--QRLAESFETALKLADGIALVA 235
Query: 253 ---EAQGTTKHFSDRFE--LDGIKFEEPTPNFFSFNNPYGACKRCEGYGNVIGIDEDLVI 307
+ G FS RF + G E P FSFNNP GAC C+G G D ++
Sbjct: 236 PMDDEPGEEIIFSARFACPICGHAISELEPKLFSFNNPAGACPTCDGLGVKQFFDIKRLV 295
Query: 308 PDKSKSVYDNAIAPWRGEKMNVW-LQNFIKAAPKFEFPIHRPYSALTETEQQLLWTGN-- 364
+ ++ + AI W ++ NV+ Q A ++F + P++ L +Q+++ G+
Sbjct: 296 -NGDMTLAEGAIRGW--DRRNVYYFQMLGSLASHYKFSLEVPFNQLPADQQKVILHGSGS 352
Query: 365 -----KY-------------FAGLDAFFKELEEQTYKIQYRVMLSRYRGKTTCPDCKGSR 406
KY F G+ + +T R L+++ CPDC+G+R
Sbjct: 353 QNVDFKYLNDRGDIVKRSHPFEGIVPNLERRYRETESASVREELAKFLSTQPCPDCRGTR 412
Query: 407 LRKDASYVKIAEKSIIDVVLMPLAKALVFFNELKLNTNDTKIAKRLLAEIDNRFLYLNNV 466
LR++A +V + EK++ V +P+ A +F LKL +IA ++L EI R +L NV
Sbjct: 413 LRREARHVWVGEKTLPAVTNLPIGDACEYFGVLKLTGRRGEIADKILKEIRERLQFLVNV 472
Query: 467 GLGYLTLNRLSNTLSGGESQRINLATSLGSSLVGSIYVLDEPSIGLHPRDTNKLIEVLIS 526
GL YL+L+R ++TLSGGE+QRI LA+ +G+ LVG +Y+LDEPSIGLH RD ++L+ L
Sbjct: 473 GLDYLSLDRSADTLSGGEAQRIRLASQIGAGLVGVLYILDEPSIGLHQRDNDRLLGTLKH 532
Query: 527 LRNVGNTVLVVEHEEEMMRAADYIIDIGPEAGTHGGNLVFSGNYEEILKDKNSLTGRYLS 586
LR++GNTV+VVEH+E+ +R ADY++DIGP AG HGG++V G E++ +SLTG+YLS
Sbjct: 533 LRDIGNTVIVVEHDEDAIRLADYVVDIGPGAGVHGGHIVAEGTPAEVMAHPDSLTGKYLS 592
Query: 587 GLEKIAIPDKR--RKWKDHILIKGARENNLQNIDVKFPLGVFTAVSGVSGSGKTSLVKKI 644
G KI +P KR R K + +KGAR NNL+N+D++ P+G+ T V+GVSGSGK++L+
Sbjct: 593 GRVKIEVPAKRTPRNKKLALHLKGARGNNLRNVDLEIPIGLLTCVTGVSGSGKSTLINNT 652
Query: 645 LYPALQKAIGNYAGEQTGAYDGIFGNYDLVSAVEMVDQNPIGRSSRSNPVTYVKAWDDIR 704
L+P A+ + A+D I G L V+ +DQ+PIGR+ RSNP TY + IR
Sbjct: 653 LFPLSATALNGATTLEAAAHDSIKGLEHLDKVVD-IDQSPIGRTPRSNPATYTGLFTPIR 711
Query: 705 ALFSGLASAKAAGLKPAAFSFNVEGGRCDVCQGEGEVKIEMQFMADIYLPCEACNGKRFK 764
LF+G+ +++ G P FSFNV+GGRC+ CQG+G +K+EM F+ DIY+PC+ C KR+
Sbjct: 712 ELFAGVPESRSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDIYVPCDVCKSKRYN 771
Query: 765 QQVLDVTYKEKNVSEILDMTIEEAVEFFKDEQKILNKLNPLVDVGLGYVHLGQSSNTLSG 824
++ L++ YK K++ E L+MTIEEA FF + KL L+DVGL Y+ LGQS+ TLSG
Sbjct: 772 RETLEIKYKGKSIHETLEMTIEEARVFFDAVPALARKLQTLMDVGLSYIKLGQSATTLSG 831
Query: 825 GEAQRIKLASFLIKGNNANKTLFIFDEPTTGLHFHDIKKLLKALNTLIEQGNTILVIEHN 884
GEAQR+KL+ L K + KTL+I DEPTTGLHF DI++LL L+ L + GNT++VIEHN
Sbjct: 832 GEAQRVKLSRELSK-RDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDHGNTVVVIEHN 890
Query: 885 MDMIKCADWVIDIGPEGGDGGGQVVFEGIPEDLVQVEKSYTGKYL 929
+D+IK ADW++D+GPEGG GGQ++ G PE + ++ +S+TG YL
Sbjct: 891 LDVIKTADWLVDLGPEGGSKGGQIIAVGTPEQVSEMPQSHTGYYL 935
Score = 137 bits (345), Expect = 3e-36
Identities = 78/196 (39%), Positives = 115/196 (58%), Gaps = 16/196 (8%)
Query: 754 PCEACNGKRFKQQVLDVTYKEKNVSEILDMTIEEAVEFF--------------KDEQKIL 799
PC C G R +++ V EK + + ++ I +A E+F K ++I
Sbjct: 404 PCPDCRGTRLRREARHVWVGEKTLPAVTNLPIGDACEYFGVLKLTGRRGEIADKILKEIR 463
Query: 800 NKLNPLVDVGLGYVHLGQSSNTLSGGEAQRIKLASFLIKGNNANKTLFIFDEPTTGLHFH 859
+L LV+VGL Y+ L +S++TLSGGEAQRI+LAS + G L+I DEP+ GLH
Sbjct: 464 ERLQFLVNVGLDYLSLDRSADTLSGGEAQRIRLASQI--GAGLVGVLYILDEPSIGLHQR 521
Query: 860 DIKKLLKALNTLIEQGNTILVIEHNMDMIKCADWVIDIGPEGGDGGGQVVFEGIPEDLVQ 919
D +LL L L + GNT++V+EH+ D I+ AD+V+DIGP G GG +V EG P +++
Sbjct: 522 DNDRLLGTLKHLRDIGNTVIVVEHDEDAIRLADYVVDIGPGAGVHGGHIVAEGTPAEVMA 581
Query: 920 VEKSYTGKYLASHLNL 935
S TGKYL+ + +
Sbjct: 582 HPDSLTGKYLSGRVKI 597
Score = 127 bits (318), Expect = 4e-33
Identities = 70/191 (36%), Positives = 113/191 (59%), Gaps = 15/191 (7%)
Query: 399 CPDCKGSRLRKDASYVKIAEKSIIDVVLMPLAKALVFFNELKLNTNDTKIAKRLLAEIDN 458
C CK R ++ +K KSI + + M + +A VFF+ + +A++L +D
Sbjct: 762 CDVCKSKRYNRETLEIKYKGKSIHETLEMTIEEARVFFDAVPA------LARKLQTLMD- 814
Query: 459 RFLYLNNVGLGYLTLNRLSNTLSGGESQRINLATSLGSSLVG-SIYVLDEPSIGLHPRDT 517
VGL Y+ L + + TLSGGE+QR+ L+ L G ++Y+LDEP+ GLH D
Sbjct: 815 -------VGLSYIKLGQSATTLSGGEAQRVKLSRELSKRDTGKTLYILDEPTTGLHFADI 867
Query: 518 NKLIEVLISLRNVGNTVLVVEHEEEMMRAADYIIDIGPEAGTHGGNLVFSGNYEEILKDK 577
+L++VL LR+ GNTV+V+EH ++++ AD+++D+GPE G+ GG ++ G E++ +
Sbjct: 868 QQLLDVLHRLRDHGNTVVVIEHNLDVIKTADWLVDLGPEGGSKGGQIIAVGTPEQVSEMP 927
Query: 578 NSLTGRYLSGL 588
S TG YL L
Sbjct: 928 QSHTGYYLKPL 938
Score = 51.6 bits (122), Expect = 2e-10
Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 13/116 (11%)
Query: 602 DHILIKGARENNLQNIDVKFPLGVFTAVSGVSGSGKTSLVKKILYPALQK----AIGNYA 657
D ILI+GAR +NL+NID+ P ++G+SGSGK+SL LY Q+ ++ YA
Sbjct: 2 DKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYA 61
Query: 658 GE-----QTGAYDGIFGNYDLVSAVEMVDQNPIGRSSRSNPVTYVKAWDDIRALFS 708
+ + D I G +S ++Q + RS T + +D +R L++
Sbjct: 62 RQFLSMMEKPDVDTIEG----LSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYA 113