Pairwise Alignments

Query, 509 a.a., transcription termination factor NusA from Pectobacterium carotovorum WPP14

Subject, 491 a.a., transcription termination/antitermination protein NusA from Ralstonia solanacearum IBSBF1503

 Score =  462 bits (1189), Expect = e-134
 Identities = 241/507 (47%), Positives = 359/507 (70%), Gaps = 20/507 (3%)

Query: 1   MNKEILAVVEAVSNEKALPREKIFEALETALATATKKKYEQEIDVRVSIDRKTGDFDTFR 60
           M++E+L +V+A++ EK + ++ +F ALE ALA+ATKK++E++++VRV+IDR++G+ +TFR
Sbjct: 1   MSREVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVEVRVAIDRESGEHETFR 60

Query: 61  RWLVVNE---VTQPTREITLEAAQFEDPALDVGGYVEDQIESVTFDRITTQTAKQVIVQK 117
           RWLVV +   + +P ++I L  A+ ++P + +  ++E+QIESV F RI  Q AKQVI+Q+
Sbjct: 61  RWLVVPDDAGLQEPDKQILLFEAREQNPDVSIDDFIEEQIESVEFGRIGAQAAKQVILQR 120

Query: 118 VREAERAMVVDQFREQEGEIITGVVKKVNRDNISLEVRPIDGSNTSAEAVIGREDMLPRE 177
           +R+AER  +++ + E+  +I+TG +K+ ++  + +E       +   EA++ R+ M+P+E
Sbjct: 121 IRDAEREQILNDYLERGEKIMTGTIKRADKKGLIVE-------SGRVEALLARDQMIPKE 173

Query: 178 NFRPGDRIRGVLYSVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEVIEIKAAARDPG 237
           N R GDR+R  + +V   ARG Q+ +SR+ PE L++LF  EVPE+ + ++EIKAAARDPG
Sbjct: 174 NLRTGDRVRAYILNVDRTARGPQIELSRTCPEFLIKLFENEVPEMEQGLLEIKAAARDPG 233

Query: 238 SRAKIAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPA 297
            RAKIAV  +DKRIDP+G CVG+RG RV AV +E+GGE +DI+LW ++PAQFVI A+APA
Sbjct: 234 VRAKIAVVAHDKRIDPIGTCVGVRGTRVTAVRNEVGGEAVDIVLWSEDPAQFVIGALAPA 293

Query: 298 DVVSIVVDEDTCTMDIAVESSNLAQAIGRNGQNVRLASQLLKQHRSDDRWELNVMTVEDL 357
            V SIVVDE+  +MD+ V+  NLA AIGR+GQNVRLAS+L         W++N+MT  + 
Sbjct: 294 QVQSIVVDEEKHSMDVVVDEENLAVAIGRSGQNVRLASEL-------TGWQINIMTPAES 346

Query: 358 QAKHQAEAHAAIDVFTKHLDIDEEFATVLVEEGFSSLEELAYVPIKELLAIEGLDEETVE 417
             K   E+     +F + LD+D+E A +L+EEGF+SLEE+AYVP++E+L IE  DE+TV 
Sbjct: 347 AQKQAEESSVVRKLFMERLDVDQEVADILIEEGFTSLEEVAYVPLQEMLEIEAFDEDTVN 406

Query: 418 ALRERAKAALTTLALAHEESLGDGQPAEDLLGLPGLSRELAFKLAAIGVCTLEDLAEQGV 477
            LR RA+  L T+ LA EE +   + ++DL  L GL+ EL  KLA   + T +DLAE  V
Sbjct: 407 ELRNRARDVLLTMELAKEEKV--EKVSQDLRDLEGLTPELIGKLAEGNIQTRDDLAELAV 464

Query: 478 DDLTDIEELNDEQAGELIMAARNICWF 504
           D+L D+  +++EQA  LIM AR   WF
Sbjct: 465 DELVDMTGVDEEQAKALIMKARE-HWF 490