Pairwise Alignments

Query, 509 a.a., transcription termination factor NusA from Pectobacterium carotovorum WPP14

Subject, 351 a.a., transcription termination/antitermination protein NusA from Bifidobacterium breve UCC2003

 Score =  181 bits (460), Expect = 3e-50
 Identities = 119/361 (32%), Positives = 187/361 (51%), Gaps = 18/361 (4%)

Query: 6   LAVVEAVSNEKALPREKIFEALETALATATKKKYEQEIDVRVSIDRKTGDFDTFRRWLVV 65
           L  +  ++ E+ +  E + +AL  AL  A  K        RV +D + G F     W   
Sbjct: 5   LTGMHKLAAEQGIDPETLDDALAEALRLAYLKTPHAAKHARVELDERAGSFTV---WAAD 61

Query: 66  NEVTQPTREITLEAAQFEDPALDVGGYVEDQIESVTFDRITTQTAKQVIVQKVREAERAM 125
           +   +PT +          PA ++G   +D      F R+   TA+QVI Q  R+ E   
Sbjct: 62  DIPVEPTEDDP-------HPAPELGEEYDDTPHD--FGRLAAATARQVITQLFRKVEDEK 112

Query: 126 VVDQFREQEGEIITGVVKKVNRDNISLEVRPIDGSNTSAEAVIGREDMLPRENFRPGDRI 185
           V   F  Q+G ++TG++++   D  ++ V     +    EA++ R + +P E +R G+RI
Sbjct: 113 VFGAFSGQKGRLVTGIIQQDASDPTNVHV-----AMGEVEAILPRREQVPGERYRHGERI 167

Query: 186 RGVLYSVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVK 245
           R  + +V    +G ++ VSRS PE++ +LF  EVPE+    + I A AR+ G+R K+AVK
Sbjct: 168 RVYVVNVARGIKGPEIVVSRSHPELVRKLFEREVPELVSGAVSIMAIAREAGARTKLAVK 227

Query: 246 TNDKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVVSI-VV 304
            N   ++P GA +G  GARV+AV   LG E+IDI+ + D+PA+FV  A++PA    + V+
Sbjct: 228 ANTDGVNPKGALIGPSGARVRAVMENLGPEKIDIVDYSDDPAKFVAAALSPAVATGVQVI 287

Query: 305 DEDTCTMDIAVESSNLAQAIGRNGQNVRLASQLLKQHRSDDRWELNVMTVEDLQAKHQAE 364
            E   T    +    L+ AIG+ GQN RLA++L       +  E +   V + QA  QA 
Sbjct: 288 SEKNKTAIAFIHDDQLSLAIGKEGQNARLAAKLTGWKIGIESAEAHAKKVAEEQAAEQAA 347

Query: 365 A 365
           A
Sbjct: 348 A 348