Pairwise Alignments

Query, 139 a.a., transcription antitermination factor NusB from Pectobacterium carotovorum WPP14

Subject, 165 a.a., NusB antitermination factor (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 82.8 bits (203), Expect = 2e-21
 Identities = 54/154 (35%), Positives = 81/154 (52%), Gaps = 17/154 (11%)

Query: 2   KPAARRRARECAVQALYSWQLS--------------KNDIAD--VEHQFLSEQDVKDVDI 45
           K   RR  R  A Q LY    +                D+AD   E +    Q       
Sbjct: 6   KKPTRRSERALAFQVLYGLSFTPATSEGALRAAYAASPDVADRNAEDEKADRQAPATAPQ 65

Query: 46  TYFRELLAGVATQAEKLDQLMAPFLSR-QIEELGQVEKAILRLAMFELSKREDVPYKVAI 104
            Y  E++ GV     +LD+ ++ F    ++E +G+VE  +LR+A++E+  R+DVP KVA+
Sbjct: 66  GYAWEVIHGVWKTQAELDEAVSGFSQNWRVERMGRVELTLLRIAVYEMLFRDDVPAKVAM 125

Query: 105 NEAIELAKIFGAEDSHKFVNGVLDKVAPSVRKGK 138
           NEAIEL+K FG ++S  F+NG+LD VA +V  G+
Sbjct: 126 NEAIELSKQFGDDNSRGFINGILDAVARAVESGR 159