Pairwise Alignments

Query, 139 a.a., transcription antitermination factor NusB from Pectobacterium carotovorum WPP14

Subject, 159 a.a., NusB antitermination factor (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 53.9 bits (128), Expect = 1e-12
 Identities = 46/141 (32%), Positives = 68/141 (48%), Gaps = 12/141 (8%)

Query: 2   KPAARRRARECAVQALYSWQLSKNDIADV-----EHQF---LSEQDVKDVDITYFRELLA 53
           K  A+  AR  AVQAL+  + +      V     +H+F     E ++ +  +T FR  + 
Sbjct: 11  KRQAKSAARLYAVQALFQMEAAGQSADSVIREFEDHRFGAIYEEGEMAEGHVTLFRTTVG 70

Query: 54  GVATQAEKLDQLMAPFLSRQ--IEELGQVEKAILRLAMFELSKREDVPYKVAINEAIELA 111
                  K+DQL    L+    I+ +    +A+ R A  EL  R D P KV INE ++LA
Sbjct: 71  EAVNWQAKIDQLTDRALATAWPIDRIDPTLRALFRAAGAELV-RADTPPKVVINEYVDLA 129

Query: 112 KIFGAEDSH-KFVNGVLDKVA 131
           + F  +    KFVN VLD +A
Sbjct: 130 RAFFPDGKEPKFVNAVLDHMA 150