Pairwise Alignments

Query, 500 a.a., efflux RND transporter periplasmic adaptor subunit from Pectobacterium carotovorum WPP14

Subject, 267 a.a., hypothetical protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  107 bits (267), Expect = 5e-28
 Identities = 81/258 (31%), Positives = 127/258 (49%), Gaps = 10/258 (3%)

Query: 12  FSLMALAILSAGGVGYLVGKQQTPHSASTAEPERA-VLYWYDPMVPDKRFDKPGKSPFMD 70
           ++ +A+  L+ G  G +  ++   + A+   P+   +LYW  PM P+ R   PGKSP M 
Sbjct: 5   YTALAILALAGGTAGGIALERFYLNPANIVGPDGPEILYWVAPMDPNFRQPGPGKSP-MG 63

Query: 71  MELVPRYADDVQ--EDGGVIVSARQQQNLGVRTARAEMRELTDRTTGYGTVALNER---G 125
           M+LVP Y  +    +   V + A +   +GVRTA + M E+  R    G V  +E     
Sbjct: 64  MDLVPVYEGEEPSGDPSEVTLDAAEINAIGVRTALSRMTEVAPRIETVGFVGYDEHLTSH 123

Query: 126 LHTLVAPSGGIVEKLTVNALQQQVKKGETLATLWNPTWAAAQREYLVVRQLGDDTLTQSA 185
           +HT V    G +E L V A+   V+  + L  L++P  AAA  + +   + GD  +  +A
Sbjct: 124 VHTRVE---GWIEDLKVRAVGDIVRGDQVLFELFSPLIAAATGDLVRAVEAGDPRILDAA 180

Query: 186 RQRLALLFMPEAIIRQVERSGKPQDRIAITAPEDGYVNKLEVRQGMQLSPAQPLFELASL 245
           R +L    M    I ++E  G+    + I AP++G V  L    GM L P    F +A L
Sbjct: 181 RNKLMSHGMSARQIAEIEAGGELVRNVEIVAPQNGVVIALNAADGMYLQPGALAFSVAGL 240

Query: 246 NPVWVDVDYPEAQAAQLT 263
           + VW+ VD  E   A+L+
Sbjct: 241 SQVWLIVDVFERDIARLS 258