Pairwise Alignments

Query, 500 a.a., efflux RND transporter periplasmic adaptor subunit from Pectobacterium carotovorum WPP14

Subject, 370 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella sp. ANA-3

 Score =  103 bits (257), Expect = 1e-26
 Identities = 70/199 (35%), Positives = 105/199 (52%), Gaps = 5/199 (2%)

Query: 213 AITAPEDGYVNKLEVRQGMQLSPAQPLFELASLNPVWVDVDYPEAQAAQLTIGSDISATS 272
           ++ AP  G    +   +G  +S    L  L  L+ + +D+  PE   +QL+IG  +SATS
Sbjct: 162 SLIAPFAGKTGLINFSEGKMVSIGTELMTLDDLSSMRLDLQVPEHFLSQLSIGMPVSATS 221

Query: 273 SAWPGKTFHGKVSELLPMLDSTTRTLKARVVLDNPQQQLKPGMYLTVQLSHTQAQPRLAI 332
            AWPG+TF GKV  + P ++  T  LK RV  +N + +LKPGM ++  L+       + +
Sbjct: 222 RAWPGETFIGKVVAIDPRVNEETLNLKIRVQFENAKNRLKPGMMMSSTLTFPPISAPI-V 280

Query: 333 PQEALLVSGSQNRVLLSDGNGHFTPR-NVTVGASLGDWVEILDGLKAGDNVVTSGQFLID 391
           P +AL  SG++  V +  G  H   R  V +GA +GD V I  GLK GD VV  G  L++
Sbjct: 281 PVQALEYSGTKRYVYVV-GEDHIAHRTEVILGARVGDQVLIDSGLKIGDKVVVQG--LVN 337

Query: 392 SEASLRSALPQFDAETSAN 410
               L+      +A+  AN
Sbjct: 338 MRDGLKINEVVLEAKNDAN 356



 Score = 24.6 bits (52), Expect = 0.006
 Identities = 34/128 (26%), Positives = 46/128 (35%), Gaps = 35/128 (27%)

Query: 373 LDGLKAGDNVVTSGQFLIDSEASLRSALPQFDAETSANPATPT----------------- 415
           LD +KA   V  +  FL D    LR    +F+   S N  T T                 
Sbjct: 97  LDDMKAQAAVAEANAFLNDETRKLR----EFEKLISRNAITQTEIDAQKASVDIARARLA 152

Query: 416 ------------APAGYRTQGVIRAINGKQATIEHEAVPALNWSPMTMDFTLPSSGLPQG 463
                       AP   +T G+I    GK  +I  E +   + S M +D  +P   L Q 
Sbjct: 153 SAQADLHYHSLIAPFAGKT-GLINFSEGKMVSIGTELMTLDDLSSMRLDLQVPEHFLSQ- 210

Query: 464 VGIGSTVS 471
           + IG  VS
Sbjct: 211 LSIGMPVS 218