Pairwise Alignments

Query, 892 a.a., TonB-dependent receptor from Pectobacterium carotovorum WPP14

Subject, 784 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

 Score =  105 bits (261), Expect = 1e-26
 Identities = 179/787 (22%), Positives = 302/787 (38%), Gaps = 138/787 (17%)

Query: 163 SREQMDNRPSRHAADMLEQSAGVYSS-VSQQDPSLSVNIRGIQDFGRVNMNIDGVRQNFQ 221
           +R  +D       AD+      V S+ +  +  +L + IRG+Q  GRV + IDG  Q+  
Sbjct: 79  TRSDLDKVRGIANADIFSGITSVQSNNMHNEAGALDIGIRGVQGEGRVPIFIDGSLQSTH 138

Query: 222 KT-GYGQRNGQMYIDSELLAGATIEKGAT--NVMGSAGTLGGVATFNTVNAHDFLAPGKE 278
            + GY   + + YID++LL+  T+ KGAT  +   ++G +GGV    T+   D +   + 
Sbjct: 139 TSRGYQGVSDRTYIDTDLLSSLTVNKGATIESSPYASGAVGGVVNATTLGIKDIIKDDQA 198

Query: 279 LGGKLHA------------------------STGDNGTHFIGSGVLALG--NERGDILVG 312
            G  L A                          G++     GS +L LG   E  + ++ 
Sbjct: 199 FGVVLKARANNHNRTPDVSGDYSEQGQYALDERGEHSAFKHGSLMLGLGYQAESFNTVLA 258

Query: 313 ASERHLGNYWPGNDGNLGNIRIPGNSSNYEAWANNL--KHQKVTSAAYTMRSRLAKIGWN 370
            S+R  GN++ G  G             YE +   +  + Q+V + ++   S L K+  +
Sbjct: 259 YSKRSKGNHFAGKKG-------------YEEYQEPVVGQGQEVVNTSFESDSWLFKLASD 305

Query: 371 LPANQRFQLSYMQTQTSSENAG--TLSNLSNTELGWKAS------------GHSEIMARS 416
                    +Y   +  ++ AG   ++    +   W+ +            G       +
Sbjct: 306 TGTAHNADFNY---RHHAQKAGEVLMAYWYKSSEDWEGNPYPDGKDRMPQWGLGTAKVNT 362

Query: 417 TALDYSLKPDNQRWLDFKAKIYY--ADTNNDTNNYAL-SNTSAYHESTRLRTYGAQAQNT 473
            + +Y  +PD+  WL+  A  +Y  AD       +AL +N   Y  +      G    N 
Sbjct: 363 YSANYYYQPDHP-WLNLNANFWYTEADLAQYNGLWALGTNAEQYFHAYHNDRSGLSLTNE 421

Query: 474 STLWQQGAHDLKADYGLDFYYDKITTD---STNSTASNATPEGNRAMASLFANLNYAYDE 530
           + L Q     ++ +YGL    ++++ +    T  T +  +  G R   +LFAN +  Y  
Sbjct: 422 TLLTQ---WPVRLNYGLAQQNERLSPEEDGQTRFTKTVTSRHGKRTAQNLFANADIDYSP 478

Query: 531 WVTLQGGLRYDRYRLRGTTSISYREIPYTVTNPCTARSIALCPPFVTTTQDWNVDDEHGK 590
            + +Q GL      L    S  Y+                       T Q  +  ++   
Sbjct: 479 -LRVQLGL-----NLHNAKSTDYQ-----------------------TKQQLDYKEKLDL 509

Query: 591 LSPTLFAGVRPGVEWLQLYTSYGLSWRPPSVSE-TFANGTYSAGNYYLYPNPNLKPERSR 649
           LS   +A + P     QL+     ++R PS+ E T +N  +S   Y    NP +KPE++ 
Sbjct: 510 LSEFTYA-LTPST---QLFLKSSRTYRMPSLYETTLSNEVFSYNPY----NP-IKPEQAW 560

Query: 650 AWEVGFNIQKPELFTDGDRLVTKVSYFDTRINNYISLNGARNKPGYNGYSLSNSVFQNNL 709
             EVG            DRL   VSYF   I ++IS       PG + +  +N  F  N 
Sbjct: 561 NNEVGVQFMASNSVLQDDRLNLSVSYFRNSIKDFISGGRLAKTPGMSEWQ-ANFTF-TNY 618

Query: 710 AKSRFRGMEYQLNYDAGFLYVDATYTHMIGNNDFCAPVAWMGGVTTVGGSRGNYYS-TPV 768
            K +  G E   +Y   +LY     T +      C+        +    S G  +  TP 
Sbjct: 619 DKLQLSGWELGAHYQYAWLYTHFAAT-LYSETKICSVQQAQYAESDTCNSLGFAWGLTPT 677

Query: 769 DTTASDASCQKTLLFSNAAYLPGDRGSVTLGTRVFDRKLDMGVTMRFAPGY---QDAAAP 825
                                P     + +GT+ F+  LD GV + +  G     D  A 
Sbjct: 678 RIP------------------PKQNLYLNVGTKFFNDTLDSGVKVSYHSGKSNPSDWLAG 719

Query: 826 ANSAYLADWPKYEVYDLYASYRLTDSLTVRGSVENIANRTYVVSYGESLGYTPSRGRTVQ 885
             +  + + P     DLY+ Y L  +  +  ++ N+ +R Y V  G S+   P  GRT+ 
Sbjct: 720 TAANPILEIPSDYTIDLYSQYELNANTQLFFAINNVTDR-YQVRPG-SVVSMPDPGRTIT 777

Query: 886 AGVEYRF 892
            G E  +
Sbjct: 778 LGFEISY 784