Pairwise Alignments

Query, 587 a.a., 30S ribosomal protein S12 methylthiotransferase accessory protein YcaO from Pectobacterium carotovorum WPP14

Subject, 728 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  538 bits (1387), Expect = e-157
 Identities = 269/580 (46%), Positives = 375/580 (64%), Gaps = 4/580 (0%)

Query: 2   TQTFIPGKDAALEDSIARFQQQLQDLGFNIEEASWLNPVPNVWSVHIRDRDCPLCFTNGK 61
           + T+I GKD  LE +IA   + L  LG  IE +SW N VPNVWS+HIRD   P+CFTNGK
Sbjct: 148 SSTYILGKDLPLEQTIANMTEILAGLGMKIEISSWRNIVPNVWSLHIRDAASPMCFTNGK 207

Query: 62  GASKKAALASALGEYFERLSTNYFFADFYLGKSIANGDFVHYPNEKWFPIPEDDALPEGI 121
           GASK++AL SALGE+ ERL+ N+F+ D + G  IAN +FVHYPNEKWF + +DD+LPEG+
Sbjct: 208 GASKESALCSALGEFIERLNCNFFYNDQFFGLDIANSEFVHYPNEKWFALTDDDSLPEGM 267

Query: 122 LDARLHQFYDPEQELSASDLIDLQSGNADRGICALPFTRQSDQQTVYIPMNIIGNLYVSN 181
           LD    + Y+P+ EL  S LID  SGN +RGIC +P+ R+SD +TVY P N+I NL++SN
Sbjct: 268 LDDYSLEIYNPDGELCGSHLIDTNSGNIERGICTIPYKRRSDGETVYFPSNLIENLFLSN 327

Query: 182 GMSAGNTANEARVQGLSEVFERSIKNRIIAESISLPEIPQEVLNRYPGVVEAIATLEKEG 241
           GMSAGN   EA VQ LSE+FER++K +II + I LP++P  VL +YP ++  I  LE++G
Sbjct: 328 GMSAGNNLQEAEVQCLSEIFERAVKRQIIEQEIVLPDVPMAVLEKYPSILAGIKGLEEQG 387

Query: 242 FPIFSYDASLGGKYPVICVVLFNPANGTCFASFGAHPDFGVALERTVTELLQGRGLKDLD 301
           FP+   DASLGG++PV+CV L NP  G  FASFGAHP F VALER++TELLQGR  + L+
Sbjct: 388 FPVVVRDASLGGQFPVMCVTLMNPKTGGVFASFGAHPSFEVALERSLTELLQGRSFEGLN 447

Query: 302 VFTPPTFDDEEVAEHANLETHFIDSSGLISWDMFKKQADYEFADWSFKGSTEEEFATLMA 361
               PTF+   V+E  N   HFIDS+G+ISW  F  +ADY F +W F G+ EEE   L  
Sbjct: 448 DVPKPTFNSMAVSEPENFVEHFIDSTGVISWRFFSNKADYAFCEWDFSGTNEEEAKGLFG 507

Query: 362 IFKQEDKEVYIADYEHLAVYACRIIVPGMSDIYPADDLLLANNSMGAHLRDTLLALPDSK 421
           I +   KEVY+A++E L   ACRI+VP  S++YP DDL+  N +     R+ +L L   +
Sbjct: 508 ILESLGKEVYVAEFEELGASACRILVPDYSEVYPVDDLIWDNTNKALDYREDILNL--HR 565

Query: 422 WEKEDYLTLLQQLDDEGLDDFTRVRELLGIATGKDNGWFTLRVGELKAMLALAGGDLDQA 481
              ++   L+ +L++  LD++T +R L+GI   ++  W  L + ELK ++ LA G  ++A
Sbjct: 566 LSDDELADLVNRLEESQLDNYTDIRTLIGIVFDENTVWGQLTIIELKILIYLALGAHEEA 625

Query: 482 LSWTEWTQDFNDSVFTAQRSNYYRCLQTLLLLAQEPERDPAEYYDAFTKMYGSETVDAAS 541
           L   E    FND+  T QR  +Y+ +  +L +  + E +  ++   FT+M+G E +    
Sbjct: 626 LELVEDFLQFNDN--TVQRGLFYQAMSAVLEVTLDEELELEDFIGNFTRMFGEEVMAQVV 683

Query: 542 AAVAGETCFYGLFAVDDTFTSLPAHQSLLAAYEKLQQAKR 581
            +V GE  F GL         +  H  L+ +Y+KL QA++
Sbjct: 684 GSVNGEVRFSGLTETSMALEGIEPHLRLIESYKKLHQARK 723