Pairwise Alignments

Query, 457 a.a., murein transglycosylase D from Pectobacterium carotovorum WPP14

Subject, 532 a.a., lytic transglycosylase from Vibrio cholerae E7946 ATCC 55056

 Score =  325 bits (833), Expect = 2e-93
 Identities = 190/489 (38%), Positives = 283/489 (57%), Gaps = 48/489 (9%)

Query: 1   MKAKAMIIASVLLAGCQVSPHDTSQPKQHAQSLSSASQSEAGKYTDGREASARW------ 54
           M+ K   + ++LL GCQ SP          Q+++  +QS   K     + +A        
Sbjct: 1   MRVKFSWVLALLLVGCQ-SPQPVDTTTSDDQAVNPPTQSATVKKKRKPQTTATLPAGETE 59

Query: 55  -LDDDSLA-----QRDLWNFIGDELKMEVPENARIREQKMRYLKNKSYLHDVTLRAEPYM 108
            ++++ +A     Q D+W  I  + K+ +P++  +  Q+  +LKN  +L  +  RAEP++
Sbjct: 60  SVEEERVALTPQEQDDVWQRIAMQFKLGIPKDPSVDAQREWFLKNPGHLQAIASRAEPFL 119

Query: 109 YWIVEQIKQRKMPMELVLLPIVESAFDPSATSSANAAGLWQIIPGTGRNYGLKQNQWYDG 168
           Y I E+++QR +P+ELVLLPIVES+FDP A S  +AAGLWQ I  TG+ YGLKQN WYDG
Sbjct: 120 YLITEKVEQRGLPLELVLLPIVESSFDPFAYSHGSAAGLWQFISSTGKRYGLKQNFWYDG 179

Query: 169 RRDVIASTTAALDMMQRLNTMFDGDWLLTVAAYNSGEGRVMQAMKANKAKGKSTSFWALA 228
           RRDV A+T AALD +  LN  FDGDW   +AAYNSGEGRV +A+KANK  GK   F++L 
Sbjct: 180 RRDVAAATDAALDYLTVLNQHFDGDWYHAIAAYNSGEGRVARAIKANKKAGKPIDFFSLD 239

Query: 229 LPRETSIYVPKMLALSDILKNSKKYGVSLPQPNESRALAKVELGQQIELTQAAEMAGLSL 288
           LP+ETS YVPK++AL+D++ N +KYG+S+P       LA V+  +Q++L  AA  AGL++
Sbjct: 240 LPKETSGYVPKLIALADVIANQEKYGISIPAIENRPVLATVDPKEQLDLAIAARYAGLTV 299

Query: 289 NKLKSYNSGYKRNVTAPNGPHYIMVPKAHVEQLKDSLADGDIAAIQPTRLAQTQSTPASQ 348
            +L+S+N  Y +  TAPNGPH +++P   VE+   ++ +     I+  R           
Sbjct: 300 KELQSFNPAYNQWATAPNGPHQLLIPVEKVERFNLAMEENRGKGIKVVR----------- 348

Query: 349 QYKVRSGDTLSAIAARLNVSTKDLQSWNNLRS-------------------AGALKVGQT 389
            YKV+SGDTLS IA + N + K ++  N + S                   A AL V   
Sbjct: 349 -YKVKSGDTLSTIADKYNTTAKVIKEANQIASNQIRVGSYLFVPTSVKDEKAYALSVSNR 407

Query: 390 LQVAKASGNGS-SITYQVRKGDSLASIAKRHGVNIADVMRWNTVINKNANIQPGDRLTLY 448
           L   ++   G   +T+ V  G+SL +IAK++ V    + +WN +  K+A ++ G +L ++
Sbjct: 408 LAKTQSVPRGQYQLTHTVNSGESLWTIAKQYNVPYQSLAKWNGMAPKDA-LRKGQKLVIW 466

Query: 449 VSSNIKPDS 457
             S  KP S
Sbjct: 467 KDS--KPTS 473



 Score = 80.1 bits (196), Expect = 2e-19
 Identities = 54/147 (36%), Positives = 79/147 (53%), Gaps = 15/147 (10%)

Query: 310 YIMVPKAHVEQLKDSLADGDIAAIQPTRLAQTQSTPASQQ---YKVRSGDTLSAIAARLN 366
           Y+ VP +    +KD  A    A     RLA+TQS P  Q    + V SG++L  IA + N
Sbjct: 387 YLFVPTS----VKDEKA---YALSVSNRLAKTQSVPRGQYQLTHTVNSGESLWTIAKQYN 439

Query: 367 VSTKDLQSWNNLRSAGALKVGQTLQVAK----ASGNGSSITYQVRKGDSLASIAKRHGVN 422
           V  + L  WN +    AL+ GQ L + K     SG   ++TY+VR GD+L+ IA +  V 
Sbjct: 440 VPYQSLAKWNGMAPKDALRKGQKLVIWKDSKPTSGVIRTVTYKVRSGDTLSGIANKFKVK 499

Query: 423 IADVMRWNTVINKNANIQPGDRLTLYV 449
            AD+++WN  +N    ++ G +L LYV
Sbjct: 500 TADIVKWND-LNSTQYLKAGQQLKLYV 525



 Score = 53.9 bits (128), Expect = 1e-11
 Identities = 52/160 (32%), Positives = 69/160 (43%), Gaps = 20/160 (12%)

Query: 235 IYVPKMLALSDILKNSKKYGVSLPQPNESRALAKVELGQ--QIELTQAAEMAGLSLNKLK 292
           I V   L +   +K+ K Y +S+     S  LAK +     Q +LT             K
Sbjct: 382 IRVGSYLFVPTSVKDEKAYALSV-----SNRLAKTQSVPRGQYQLTHTVNSGESLWTIAK 436

Query: 293 SYNSGYKRNVTAPNGPHYIMVPKAHVEQLKDSLADGDIAAIQPTRLAQTQSTPASQQYKV 352
            YN  Y+ ++   NG    M PK       D+L  G    I       T     +  YKV
Sbjct: 437 QYNVPYQ-SLAKWNG----MAPK-------DALRKGQKLVIWKDS-KPTSGVIRTVTYKV 483

Query: 353 RSGDTLSAIAARLNVSTKDLQSWNNLRSAGALKVGQTLQV 392
           RSGDTLS IA +  V T D+  WN+L S   LK GQ L++
Sbjct: 484 RSGDTLSGIANKFKVKTADIVKWNDLNSTQYLKAGQQLKL 523