Pairwise Alignments

Query, 325 a.a., 23S rRNA pseudouridine(1911/1915/1917) synthase RluD from Pectobacterium carotovorum WPP14

Subject, 343 a.a., ribosomal large subunit pseudouridine synthase from Sinorhizobium meliloti 1021

 Score =  209 bits (532), Expect = 8e-59
 Identities = 138/325 (42%), Positives = 179/325 (55%), Gaps = 37/325 (11%)

Query: 19  RLDQALAE-LFPDYSRSRIKEWILENRVQINGNVTNKPKEKVLGGESVAIDALIEEEARW 77
           RLD  L E L  ++SR+RIK  I +  V ING    +PK KV  G+S  I     E+   
Sbjct: 24  RLDAFLTEALAGEFSRNRIKSLIEQGAVSINGATVTEPKRKVHPGDSFRIALPEPEDPEP 83

Query: 78  EAQDIKLDIVYEDQDILVINKPRDLVVHPGAGNPDGTVLNALLHHYPE----IVDVPRAG 133
           + + I LD++YED D++V+ KP  LVVHPGAGN  GT++NAL+HH  +    I  V R G
Sbjct: 84  KGEAIPLDVLYEDADLIVLVKPAGLVVHPGAGNWTGTLVNALIHHCGDSLSGIGGVKRPG 143

Query: 134 IVHRLDKDTTGLMVVAKTVPAQTRLVEAL----QAREITREYEAVAIG-SMTAGGMVEQP 188
           IVHRLDKDT+G+MVVAK   A   L +      +   + R Y AV  G      G ++ P
Sbjct: 144 IVHRLDKDTSGVMVVAKNDAAHRHLSDQFADHGRNGPLERAYRAVVWGRPRQLKGKIDAP 203

Query: 189 IARHATKRTHMAV----HPMGKPAVTHYRIMEHFRAH-------TRLRLRLETGRTHQIR 237
           + R A  RT  AV        + A+THY ++E +          + +   LETGRTHQIR
Sbjct: 204 LGR-AGDRTKRAVKREDSDDAREAITHYEVVERYHEKPDGTSLASTVECHLETGRTHQIR 262

Query: 238 VHMAHINHPLVGDQLYGGR--------PRPPKGASEDFIEMLRGFDRQALHATMLRFYHP 289
           VHMAHI HPL+GD  YG          P P + A       +  F RQALHA ML+F HP
Sbjct: 263 VHMAHIGHPLIGDPDYGAAFRTKANLLPEPARAA-------VNRFPRQALHAFMLQFEHP 315

Query: 290 ITGIHMEWHAELPQDMVDLIDALKA 314
            TG  M +   +P DM +LI AL+A
Sbjct: 316 ATGETMHFETPVPADMQELIAALRA 340