Pairwise Alignments

Query, 325 a.a., 23S rRNA pseudouridine(1911/1915/1917) synthase RluD from Pectobacterium carotovorum WPP14

Subject, 343 a.a., Pseudouridine synthase, RluD (NCBI) from Rhodospirillum rubrum S1H

 Score =  223 bits (569), Expect = 4e-63
 Identities = 131/296 (44%), Positives = 177/296 (59%), Gaps = 8/296 (2%)

Query: 17  GQRLDQALAELFPDYSRSRIKEWILENRVQINGNVTNKPKEKVLGGESVAIDALIEEEAR 76
           GQRLD+ LA + P  SR+R+++ I E RV +NG    +   +V  G++V ++      A 
Sbjct: 35  GQRLDKWLATVIPTLSRARLQQLIGEKRVSVNGQTIGEGSRRVKPGQTVRVEEPPPIAAT 94

Query: 77  WEAQDIKLDIVYEDQDILVINKPRDLVVHPGAGNPDGTVLNALLHHY-PEIVDV---PRA 132
            + + I L +VYED D++VI+K   +VVHPG GNPD T++NALL H  P +  +    R 
Sbjct: 95  PQPEAIALTVVYEDDDLIVIDKAAGMVVHPGPGNPDHTLVNALLAHCGPSLSGIGGERRP 154

Query: 133 GIVHRLDKDTTGLMVVAKTVPAQTRLVEALQAREITREYEAVAIG-SMTAGGMVEQPIAR 191
           GIVHRLDKDT+GLM+ AKT  A   L E      +TREY  +  G    A G ++ P+ R
Sbjct: 155 GIVHRLDKDTSGLMIAAKTDLAHHGLAEQFACHSLTREYLCLVWGRPRPAAGSIDAPLGR 214

Query: 192 HATKRTHMAVHPM-GKPAVTHYRIMEHFRAHTRL-RLRLETGRTHQIRVHMAHINHPLVG 249
           H T+R  MAV    GK A+THYR++        + +  L TGRTHQ+RVHMAHI HPL+G
Sbjct: 215 HPTQRKKMAVVSRGGKRALTHYRVVGDVEGIASIVKCTLSTGRTHQVRVHMAHIGHPLLG 274

Query: 250 DQLYGGRPRPPKGASEDFIEMLRGFDRQALHATMLRFYHPITGIHMEWHAELPQDM 305
           D +YG R   PK    D  E +    RQALH+  L F HP TG  +E+ +ELP D+
Sbjct: 275 DAVYGHR-NIPKKLPGDLSERIARLTRQALHSFHLGFLHPRTGESLEFLSELPLDI 329