Pairwise Alignments

Query, 818 a.a., ribonuclease R from Pectobacterium carotovorum WPP14

Subject, 808 a.a., ribonuclease R (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  917 bits (2369), Expect = 0.0
 Identities = 460/811 (56%), Positives = 594/811 (73%), Gaps = 16/811 (1%)

Query: 1   MSQDPFLEREAEKYESPIPSREYILAHIAKRDTPISREELAADLQLTGEEALEALRRRLR 60
           M +DP  ERE +KYE+PIPSREYI+ ++  + +PI+R+ +AA LQ+  EE LEALRRRLR
Sbjct: 1   MIKDPHFEREQDKYENPIPSREYIIEYLRSQKSPITRDSIAAALQIHDEEQLEALRRRLR 60

Query: 61  AMERDGQLIFTRRQCYALPEKLDLLRGTVIGHRDGFGFLRVEGRKDDLYLSAEEMKRTIH 120
           AMERDG+L+FTR Q Y LPEK+DL+ GTV+GH++G+GF + +   DDL++S  +M    H
Sbjct: 61  AMERDGELVFTRGQSYGLPEKMDLISGTVLGHKEGYGFFKPDEGGDDLFISNRDMLMYFH 120

Query: 121 GDVALAQPLGADRKGRREGRIVRVLEPRTGQIVGRYFVDAGVGFVVPDDSRLSFDILIPK 180
           GD  LAQ +G DRKGRRE RIVR+++PR+  IVGR+ VD+G+ FV+ DD R++ +ILI  
Sbjct: 121 GDKVLAQKVGMDRKGRREARIVRLIQPRSAAIVGRFHVDSGMAFVIADDKRITQEILIAS 180

Query: 181 EEINGARMGFVVVVELTQRATRRTKAVGKIVEILGDNMGTGLAVDIALRTHDIPHTWPPK 240
           E+ NGAR G VVVVELT+R  R  KA GK+ E+LG  M  G+ ++IALR +D+PHTW   
Sbjct: 181 EDRNGARQGDVVVVELTRRPGRFVKAAGKVTEVLGKQMAPGMEIEIALRNYDLPHTWSAA 240

Query: 241 VEEQVKDLSEEVPEAAKKGRVDLRKLPLVTIDGEDARDFDDAVHCEPKRGGGWRLWVAIA 300
           +E++++ + +EV E+ K GRVDLR LPLVTIDGEDARDFDDAV+ E K  GGWRLWVAIA
Sbjct: 241 IEKKLRRIPDEVTESDKVGRVDLRSLPLVTIDGEDARDFDDAVYAEVKPSGGWRLWVAIA 300

Query: 301 DVSYYVRPNTPLDHEARARGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360
           DVSYYVR ++ LD EARARG SVYFPSQV+PMLPE +SNGLCSLNP VDRLCMV EMT+S
Sbjct: 301 DVSYYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSLNPHVDRLCMVAEMTIS 360

Query: 361 AQGKLSSYKFYEAVMSSHARLTYTKVWHILQGDAELREHYKPLVGGLEELHRMYKALEHA 420
           A+GKLS YKFY AVM SHAR TYT+V  +L+G     EH + L   L+ L  +Y AL+  
Sbjct: 361 ARGKLSGYKFYPAVMHSHARFTYTQVAAMLEGGPIAPEH-EALFVHLQCLQSLYLALDEQ 419

Query: 421 REVRGGIAFETEEAKFIFNAERRIERVEAVVRNDAHKLIEECMILANISAAKFVEKNEEP 480
           R  RG IAFET E +FIFN +R+I+++    RN AHK+IEECMILAN+SAAKFV+K++  
Sbjct: 420 RAERGAIAFETIETQFIFNDQRKIDKIVPRARNQAHKIIEECMILANVSAAKFVKKHKGE 479

Query: 481 ALFRVHDQPSEDHVLALRSVLGELGLTLKGGMKPQPKDYAELMNELADRPDREMLQTMLL 540
            L+RVH+ PSE  +   +  L E GL++ GG++P P DY  +M ++ADRPD E++Q MLL
Sbjct: 480 ILYRVHESPSEQKLANFKEFLAERGLSMGGGLEPTPADYQNVMLQIADRPDAELIQVMLL 539

Query: 541 RSMKQAIYDPENRGHFGLALTSYGHFTSPIRRYPDLSLHRAIKYLLS----DRHERWTST 596
           RSM+QAIY P+N GHFGLAL  Y HFTSPIRRYPDL LHR I+YLL+    + +E+WT  
Sbjct: 540 RSMRQAIYTPDNEGHFGLALEEYAHFTSPIRRYPDLVLHRVIRYLLAKEKGEANEKWTPD 599

Query: 597 GGWHSDINEMLQLGMHCSMTERRADEATRDVADWLKCDFMQDHVGEVFTGIIASVTGFGF 656
           GG+H  ++E+ QLG  CS TERRADEATRDV+DWLKC+FMQDHVG+ F  +IASVT FG 
Sbjct: 600 GGYHYQLDELDQLGEECSTTERRADEATRDVSDWLKCEFMQDHVGDTFEAVIASVTNFGL 659

Query: 657 FVRLKDLFIDGLVHVSTLDNDYYRYDNIGQRLIGESRGQVYRLGDEVEIRVEAVHMDERN 716
           FVRL DLFIDGLVH+S+L +DYY++D + QRLIGE  GQVY++GD V ++V AV++D+R 
Sbjct: 660 FVRLNDLFIDGLVHISSLGSDYYQFDPMRQRLIGEHTGQVYQVGDPVTVKVAAVNLDDRQ 719

Query: 717 IDFALISSTRK--------VRGEGKTARDRVKKPDSREAKPARRRRSASKAPANFEPDAA 768
           ID  ++  + K         R +  TAR+RV +  ++ AK A+   + SKA +      +
Sbjct: 720 IDLMMLGDSGKGGRRKAAPSRDKPMTARERVNREGAKMAKTAKSSGAKSKAGSGKAASKS 779

Query: 769 FRKEGDSSAKSDKSKAKPKKNRDKAKKNAEK 799
             K G    KS K  AK  K    AK++  K
Sbjct: 780 KSKAGTKPKKSVKDTAKKPK---AAKRSTRK 807