Pairwise Alignments

Query, 419 a.a., transcription termination factor Rho from Pectobacterium carotovorum WPP14

Subject, 421 a.a., transcription termination factor Rho (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  734 bits (1896), Expect = 0.0
 Identities = 366/419 (87%), Positives = 396/419 (94%)

Query: 1   MNLTELKNTPVSELITLGENMGLENQARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60
           MNLTELK+TP+S+L++L ENM LEN AR RKQDIIF+ILK HAKSGEDIFG GVLEILQD
Sbjct: 1   MNLTELKDTPISDLVSLAENMKLENMARARKQDIIFSILKAHAKSGEDIFGGGVLEILQD 60

Query: 61  GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120
           GFGFLRSAD SYLAGPDDIYVSPSQIRRFN+RTGDTI GKIRPPKEGERYFALLKVNEVN
Sbjct: 61  GFGFLRSADGSYLAGPDDIYVSPSQIRRFNMRTGDTIFGKIRPPKEGERYFALLKVNEVN 120

Query: 121 YDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180
           +DKPEN+RNKILFENLTPLHA  R+RMERGNGSTED+TAR+LDL SPIG+GQRGLIVAPP
Sbjct: 121 FDKPENSRNKILFENLTPLHAEERMRMERGNGSTEDITARILDLCSPIGKGQRGLIVAPP 180

Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240
           KAGKT+LLQNIAQSI YN+P+ VLMVLLIDERPEEVTEMQRLVKGEV+ASTFDEPASRHV
Sbjct: 181 KAGKTLLLQNIAQSITYNNPEVVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV 240

Query: 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300
           QVAEMVIEKAKRLVEHKKDV+ILLDSITRLARAYNTV+P+SGKVLTGGVDANALHRPKRF
Sbjct: 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRF 300

Query: 301 FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLARKIAEKRVFPAIDY 360
           FGAARN+E GGSLTIIATALVDTGSKMDEVIYEEFKGTGN ELHL+RK AEKRVFPAID+
Sbjct: 301 FGAARNIENGGSLTIIATALVDTGSKMDEVIYEEFKGTGNQELHLSRKAAEKRVFPAIDF 360

Query: 361 NRSGTRKEELLTTSEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDEFFDMMKRS 419
           NRSGTR+EE LT  +ELQKMWILRKI++PM E+ AMEFLI+KLAMTKTNDEFF  MKR+
Sbjct: 361 NRSGTRREEKLTNPDELQKMWILRKILNPMDEVSAMEFLIDKLAMTKTNDEFFTAMKRA 419