Pairwise Alignments

Query, 419 a.a., transcription termination factor Rho from Pectobacterium carotovorum WPP14

Subject, 416 a.a., transcription termination factor Rho (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  551 bits (1421), Expect = e-161
 Identities = 277/419 (66%), Positives = 343/419 (81%), Gaps = 4/419 (0%)

Query: 1   MNLTELKNTPVSELITLGENMGLENQARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60
           MNL+ELK   + EL+ L E   +EN + MRKQ++IFA+L+  A     I+GDGVLEIL D
Sbjct: 1   MNLSELKIKSMQELMELAEQFKVENASGMRKQELIFALLQACASQNGAIYGDGVLEILPD 60

Query: 61  GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120
           GFGFLRS   SY+ GPDDIYVSPSQIRRF LR GD +SG+IRPPKEGERYFALLKV E+ 
Sbjct: 61  GFGFLRSPLCSYMPGPDDIYVSPSQIRRFALRKGDVVSGQIRPPKEGERYFALLKVTEIG 120

Query: 121 YDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180
           ++ PENA+N +LF+NLTP++ + +  ME G+   ++ ++R++D+ +PIG GQRGLIVAPP
Sbjct: 121 FEPPENAKNLVLFDNLTPIYPDRQFIMENGD---KNYSSRIIDIMAPIGCGQRGLIVAPP 177

Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKG-EVVASTFDEPASRH 239
           + GKTMLLQ IA SI  N PD  L+VLLIDERPEEVT+M+R VK  EVV+STFDEP  RH
Sbjct: 178 RTGKTMLLQTIANSINANSPDTYLIVLLIDERPEEVTDMERTVKNAEVVSSTFDEPPQRH 237

Query: 240 VQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKR 299
           VQV EMV+EKAKRLVE K+DV+ILLDSITRL RAYN V P+SG+VL+GG+DANAL RPKR
Sbjct: 238 VQVCEMVLEKAKRLVERKRDVVILLDSITRLGRAYNAVTPSSGRVLSGGLDANALQRPKR 297

Query: 300 FFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLARKIAEKRVFPAID 359
           FFGAARN+EEGGSLTIIATAL+DTGS+MDEVI+EEFKGTGNME++L R ++EKRVFPAID
Sbjct: 298 FFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMEIYLDRHLSEKRVFPAID 357

Query: 360 YNRSGTRKEELLTTSEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDEFFDMMKR 418
            NR+GTRKE+LL + E L ++WILRKI+ PM  ID+MEFL++K+  TK+N +F + M +
Sbjct: 358 INRTGTRKEDLLLSDEVLNRVWILRKILAPMSSIDSMEFLLDKMRGTKSNRDFMNCMNK 416