Pairwise Alignments

Query, 283 a.a., flagellar motor protein from Pseudomonas aeruginosa PA14

Subject, 295 a.a., Motility protein A from Azospirillum sp. SherDot2

 Score =  222 bits (566), Expect = 7e-63
 Identities = 118/280 (42%), Positives = 171/280 (61%), Gaps = 2/280 (0%)

Query: 1   MSKIIGIIVVFASVLGGFLLSGGKIGAIIQPFEVLIIGGAALGAFLQANPGSTFMVVLKK 60
           M  + G+I VFASVLGGF   GG++  + QP E++II GA +G F  AN  +     L+ 
Sbjct: 1   MRLMFGLIAVFASVLGGFYAMGGRMAVLWQPVEIVIIIGAGIGGFAIANSPAVLRDTLRA 60

Query: 61  APKMFSNRFT-QTYYLEVLGMLYEILNKSRREGMMAIEADIEDPAASPIFSKYPGVLKDE 119
              +   R T +  YL+++ ++Y +L  ++ +GM  IEADI+ PA SP+F++YP VL+ +
Sbjct: 61  VGTIARGRTTPKNDYLDMIALVYGLLRVAKSKGMSQIEADIDKPADSPLFTQYPNVLRYD 120

Query: 120 RMTAYVCDYLRIMSSGNMAPHELEGLFDMELSSLKEDLEHPSHAVTKVADALPGFGIVAA 179
           R   ++CDYLR+++ G   PH+LE L   EL +L  +L     A+  +ADALP  GIVAA
Sbjct: 121 RCITFLCDYLRLIALGQDNPHDLESLMAEELDTLGRELNQVPKALQNLADALPALGIVAA 180

Query: 180 VLGIVITMALLGEGSQAEIGHHVAAALVGTFLGILAAYGFVGPLAVALEHDAKEELNMFE 239
           VLG++  M  + E  +  +G  +  AL GTFLG+L +YG VGP+A A     + ELNM+ 
Sbjct: 181 VLGVINAMGAISEAPEV-LGRMIGGALTGTFLGVLLSYGMVGPIASAARQRRESELNMYF 239

Query: 240 AIKACLVASASGMPPSLAVEFGRKVLLPAHRPTFAELEQA 279
            IKA L A   G PP +  E+ RKVL    +P+ AE+E A
Sbjct: 240 CIKAALCAYLRGSPPQVCAEYARKVLYTDIQPSLAEVEVA 279