Pairwise Alignments

Query, 283 a.a., flagellar motor protein from Pseudomonas aeruginosa PA14

Subject, 286 a.a., Motility protein A from Azospirillum sp. SherDot2

 Score =  213 bits (543), Expect = 3e-60
 Identities = 113/280 (40%), Positives = 173/280 (61%), Gaps = 2/280 (0%)

Query: 1   MSKIIGIIVVFASVLGGFLLSGGKIGAIIQPFEVLIIGGAALGAFLQANPGSTFMVVLKK 60
           M  +IG  +V  SV GG++L GG +G +  PFE +II G+  GAF  ANP S      K+
Sbjct: 1   MFVMIGFGIVIFSVFGGYILGGGHMGVLWMPFEFMIILGSGAGAFFIANPKSVVTHTGKE 60

Query: 61  APKMFSN-RFTQTYYLEVLGMLYEILNKSRREGMMAIEADIEDPAASPIFSKYPGVLKDE 119
              +F   ++ +  +LEVL M+Y++   ++ +G++A+E  IE P  SP+F ++P    D 
Sbjct: 61  LGHLFKGPKYKKEDFLEVLTMMYQVFKIAKTKGLLALEQHIEKPEDSPLFQQFPKFYGDH 120

Query: 120 RMTAYVCDYLRIMSSGNMAPHELEGLFDMELSSLKEDLEHPSHAVTKVADALPGFGIVAA 179
              A++C YLR+MS G   PHEL  L D ++ ++  + +  + A+  VADA+P  GIVAA
Sbjct: 121 HAIAFLCTYLRLMSLGADNPHELVDLMDEDIETMHHEHQRIADAIQAVADAVPALGIVAA 180

Query: 180 VLGIVITMALLGEGSQAEIGHHVAAALVGTFLGILAAYGFVGPLAVALEHDAKEELNMFE 239
           VLG++ TM  + E  +  +G  +  ALVGTF GIL AYGF+ P+A  L++    E   ++
Sbjct: 181 VLGVIHTMGSITEPPEV-LGKLIGGALVGTFTGILVAYGFLAPIASGLKNVYHAEGKYYQ 239

Query: 240 AIKACLVASASGMPPSLAVEFGRKVLLPAHRPTFAELEQA 279
           A+K  L+A  SG  P+++VE+ R VL P +RPTFA++E+A
Sbjct: 240 AMKTGLIAHLSGYAPAISVEYARNVLEPEYRPTFAQVEEA 279