Pairwise Alignments

Query, 469 a.a., nitrogen metabolism transcriptional regulator, NtrC, Fis family (RefSeq) from Shewanella loihica PV-4

Subject, 441 a.a., fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein from Escherichia coli BL21

 Score =  319 bits (817), Expect = 1e-91
 Identities = 195/466 (41%), Positives = 276/466 (59%), Gaps = 41/466 (8%)

Query: 5   VWVLDDDSSIRWVVERALKGAKISCASFAAAESLWQALEQTQPQV---IISDIRMPGTDG 61
           + V+DDD S   +++  L+G   + A    A S  QALEQ + +V   ++ D+RM   DG
Sbjct: 8   ILVVDDDISHCTILQALLRGWGYNVA---LANSGRQALEQVRERVFDLVLCDVRMAEMDG 64

Query: 62  LTLLDRLQLHYPHIPVIIMTAHSDLDSAVSAYQAGAFEYLPKPFDIDEAIGLVERALSHA 121
           +  L  ++   P IPV+IMTA+S +++AV A + GA +YL KP D D     +E+AL+H 
Sbjct: 65  IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124

Query: 122 KEQSPKVISQPEVKAPE--IIGEAPAMQEVFRAIGRLSRSSISVLINGQSGTGKELVAGA 179
                +    P V A +  ++G++PAMQ +   I  ++ S  +VLI+G SGTGKELVA A
Sbjct: 125 HSIDAET---PAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181

Query: 180 LHKHSPRKDKPFIALNMAAIPKELIESELFGHEKGAFTGAANVRQGRFEQADGGTLFLDE 239
           +H  S R +KP + LN AA+ + L+ESELFGHEKGAFTGA   R+GRF +ADGGTLFLDE
Sbjct: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241

Query: 240 IGDMPLDVQTRLLRVLADGQFYRIGGHSPVQVDVRIIAATHQNLESLVAKGDFREDLFHR 299
           IGD+   +Q RLLR + + +  R+G +  + VDVR+IAATH++L + V  G FR+DL++R
Sbjct: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301

Query: 300 LNVIRVHLPPLSQRREDIPQLARHFLATAAKEISVEPKILTKATADTLASLPWPGNVRQL 359
           LNV+ + +P L QRREDIP LA HFL   A+      K  T    D L    WPGN+R+L
Sbjct: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361

Query: 360 ENTCRWLMVMASGQEILPQDLPPELLTPSNSHDSSPQAGSGGWQEALTQWIDQRLSEGES 419
           EN     +V+ +G+ I  ++LP  +        S+P                  +  G+S
Sbjct: 362 ENAVERAVVLLTGEYISERELPLAIA-------STP------------------IPLGQS 396

Query: 420 DLLTQIQP--AFEKILLETALKHTKGHKQEAAKRLGWGRNTLTRKL 463
                IQP    EK ++  AL+ T G+K EAA++LG  R TL  KL
Sbjct: 397 Q---DIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439