Pairwise Alignments

Query, 287 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

Subject, 307 a.a., YicC/YloC family endoribonuclease from Paraburkholderia sabiae LMG 24235

 Score =  191 bits (486), Expect = 1e-53
 Identities = 112/307 (36%), Positives = 174/307 (56%), Gaps = 20/307 (6%)

Query: 1   MIQSMTAYARI--EHKAQWG----TASWEIRSVNQRYLETYLRLPEQLRSLEPVLRDRLR 54
           MI SMT YA    E  A  G    + S E+R+VN R+L+   R+PE +R  EP LR+ L 
Sbjct: 1   MIYSMTGYASATRELAAASGNGGVSVSVELRTVNSRFLDLNFRMPEDVRVCEPTLREMLM 60

Query: 55  KRLNRGKIEVNLRYDLGEEKNNDLQLNQ-ALASQIIQAANWVKQEAGQGEINIVDVLRWP 113
            +L+RGK+++ +     E+  N   LN+ AL    +   + ++     G +   ++LRWP
Sbjct: 61  NKLSRGKVDIRINLQRSEQSANAGALNRDALEQLAVLERSVLEAFPDAGRLRTGEILRWP 120

Query: 114 GVMSGSEQDMDAIGKELLSAFDSAVDQFIEARGREGDAIKTMLETRLEAIEGQVAIVRQH 173
           GV++ S    + +   +L+    A+   I+ RGREG  + TML   +  +E  V  +   
Sbjct: 121 GVLAESGVSPEVLRDAVLACGKQAITDLIDVRGREGAQLATMLLNNVTEMEAIVTKITPL 180

Query: 174 MPTVMQWQRDKLTNRLAEIQGELDP-------------ARLEQEMVLLAQKMDVAEEMDR 220
           +P ++   + K+  RL E  G   P              R+ QE+ +   ++D+AEE+ R
Sbjct: 181 VPELIAKHQQKIVERLQEALGIAAPDTAATIVSREEIAERIRQEVTMYGIRIDIAEELSR 240

Query: 221 LDAHVAETRRILKKGGAQGRRLDFMMQEFNRESNTLASKSISSEVTAAAVELKVLIEQMR 280
           L AH+ ETR +++KGG  G+RLDFMMQE NRE+NTL SK+ + E+  +++ LK+LIEQMR
Sbjct: 241 LTAHLNETRHVIQKGGKVGKRLDFMMQELNREANTLGSKAAAKELADSSMTLKLLIEQMR 300

Query: 281 EQIQNVE 287
           EQ+QN+E
Sbjct: 301 EQVQNLE 307