Pairwise Alignments

Query, 610 a.a., ATP-dependent DNA helicase RecQ (RefSeq) from Shewanella loihica PV-4

Subject, 709 a.a., ATP-dependent DNA helicase RecQ from Pseudomonas sp. DMC3

 Score =  545 bits (1403), Expect = e-159
 Identities = 288/587 (49%), Positives = 392/587 (66%), Gaps = 6/587 (1%)

Query: 20  LQTVFGYRTFRTGQREVIEQVCGGQDALVIMPTGGGKSLCYQLPALVLHGLTLVVSPLIS 79
           L+ +FGY +FR  Q  +IE+V  G DALV+MPTGGGKSLC+Q+PAL+  GL +VVSPLI+
Sbjct: 9   LKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLREGLAVVVSPLIA 68

Query: 80  LMKDQVDSLKQMGVAAAYLNSSQSREEALTIYRQLHNGELKLLYVSPERLLTDSFIERLH 139
           LM DQV +L+++GVAAA LNS+ S E+   +  ++  GE+K+LY++PERL+    +  L 
Sbjct: 69  LMDDQVATLEELGVAAAALNSTLSAEQQRDLALRIKRGEVKMLYLAPERLVQPRMLAFLQ 128

Query: 140 NLPLSLFAIDEAHCISQWGHDFRPEYAALGQLKQLFPRVPMMALTATADKATREDICQRL 199
           +L ++LFAIDEAHC+SQWGHDFR EY  LGQL +LFP VP +ALTATADK TRE+I  RL
Sbjct: 129 SLEIALFAIDEAHCVSQWGHDFRREYLQLGQLAELFPNVPRIALTATADKRTREEIVDRL 188

Query: 200 GIAPFE-LLTSFDRPNIRYTVAEKLNAANQLRQFIQAQNGNSGIIYCSSRRRVDEVAERL 258
            +   E  L+SFDRPNI Y +  K     QL  F+  +  ++GI+YC SR++V+EVA  L
Sbjct: 189 HLQNAERFLSSFDRPNIFYRIVPKEQPRKQLLAFLAERRSDAGIVYCLSRKKVEEVAAFL 248

Query: 259 RMQGYHADAYHAGKTQEERADIQERFLKDQLDIVVATVAFGMGINKSNVRFVVHYDIPKS 318
             QG+ A  YHAG   + RA  Q+RFL ++  I+VATVAFGMGI+K NVRFV H D+PKS
Sbjct: 249 SEQGFPALPYHAGLPNDLRAYHQKRFLNEEGLIMVATVAFGMGIDKPNVRFVAHLDLPKS 308

Query: 319 VEAYYQETGRAGRDGLDAEAFMLFDPADIGRVRHLIEQQEPGPQ-QQVEYHKLNTMAAFA 377
           +EAYYQETGR GRDGL A+A+M +   D+  ++ +++  E   + +++E HKL+ M +  
Sbjct: 309 LEAYYQETGRGGRDGLPADAWMAYGLQDVVMLKQMLQNSEGDERHKRLEQHKLDAMLSLC 368

Query: 378 EAQTCRRQVLLHYFDESASEPCGNCDICLDPPKRYDGVEDAQKVLSCIFRLQQKFGVNHL 437
           E   CRRQ LL YFDE   EPCG+CD C+D  + +D  E A++ LS IFR  Q++GV HL
Sbjct: 369 EETRCRRQALLAYFDEDMPEPCGHCDNCVDGVQTWDATEPARQALSAIFRTGQRYGVGHL 428

Query: 438 IEVLRGSKAASVVDRGHDKLSTWGIGKEKSHEFWLSIIRQIIHLGFASQDITRGSAIKLN 497
           ++VL G     V   GH  LS +G+GK  S   W S+ RQ++  G A  D      ++LN
Sbjct: 429 VDVLLGKDNEKVRSFGHQHLSVFGVGKALSESEWRSLFRQLVARGLADVDHEGYGGLRLN 488

Query: 498 PQARAVLKGELPLQL---AEPRISITTHVKRRSSSRAPINYDRKLFARLKQLRRSLAEEL 554
              R +LKGE+ L+L    +P+++  T  K ++S       +R+ +  L+ LRR LAEE 
Sbjct: 489 DSCRPLLKGEVKLELRRDLKPQVTAKTGSKSQASQLVR-GEEREQWEALRALRRKLAEEH 547

Query: 555 DVPPYLVFNDATLAEMAAMLPTSPGEMLAVNGVGETKLNRFGGEFLD 601
            VPPY++F D+TL EM    PTS  EM  V+GVG  KL R+G  FL+
Sbjct: 548 GVPPYVIFPDSTLLEMLRSQPTSLAEMARVSGVGARKLERYGEAFLE 594