Pairwise Alignments

Query, 610 a.a., ATP-dependent DNA helicase RecQ (RefSeq) from Shewanella loihica PV-4

Subject, 708 a.a., DNA helicase RecQ from Pseudomonas fluorescens SBW25

 Score =  550 bits (1417), Expect = e-161
 Identities = 288/585 (49%), Positives = 396/585 (67%), Gaps = 3/585 (0%)

Query: 20  LQTVFGYRTFRTGQREVIEQVCGGQDALVIMPTGGGKSLCYQLPALVLHGLTLVVSPLIS 79
           L+ +FGY +FR  Q  +IE+V  G DALV+MPTGGGKSLC+Q+PAL+ +GL +VVSPLI+
Sbjct: 9   LKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLRNGLAVVVSPLIA 68

Query: 80  LMKDQVDSLKQMGVAAAYLNSSQSREEALTIYRQLHNGELKLLYVSPERLLTDSFIERLH 139
           LM DQV +L+++GVAAA LNS+ S E+   +  ++  GE+K+LY++PERL+    +  L 
Sbjct: 69  LMDDQVATLEELGVAAASLNSTLSAEQQRDLAARIKRGEVKMLYLAPERLVQPRMLAFLQ 128

Query: 140 NLPLSLFAIDEAHCISQWGHDFRPEYAALGQLKQLFPRVPMMALTATADKATREDICQRL 199
           +L ++LFAIDEAHC+SQWGHDFR EY  LGQL +LFP VP +ALTATADK TRE+I +RL
Sbjct: 129 SLEIALFAIDEAHCVSQWGHDFRREYLQLGQLAELFPDVPRIALTATADKRTREEIVERL 188

Query: 200 GIAPFE-LLTSFDRPNIRYTVAEKLNAANQLRQFIQAQNGNSGIIYCSSRRRVDEVAERL 258
            +   E  L+SFDRPNI Y +  K     QL  F+  +  ++GI+YC SR++VDEVA  L
Sbjct: 189 HLQNAERFLSSFDRPNIFYRIVPKEQPRKQLLAFLSERRSDAGIVYCLSRKKVDEVAAFL 248

Query: 259 RMQGYHADAYHAGKTQEERADIQERFLKDQLDIVVATVAFGMGINKSNVRFVVHYDIPKS 318
             QGY A  YHAG   E R+  Q+RFL ++  I+VAT+AFGMGI+KSNVRFV H D+PKS
Sbjct: 249 CEQGYPALPYHAGLPNETRSAHQKRFLNEEGLIMVATIAFGMGIDKSNVRFVAHMDLPKS 308

Query: 319 VEAYYQETGRAGRDGLDAEAFMLFDPADIGRVRHLIEQQEPGPQ-QQVEYHKLNTMAAFA 377
           +EAYYQETGRAGRDGL A+A+M++   D+  ++ +++  E   + +++E HKL+ M +  
Sbjct: 309 LEAYYQETGRAGRDGLPADAWMVYGLQDVVMLKQMLQNSEGDERHKRLEQHKLDAMLSLC 368

Query: 378 EAQTCRRQVLLHYFDESASEPCGNCDICLDPPKRYDGVEDAQKVLSCIFRLQQKFGVNHL 437
           E   CRRQ LL YFDE   +PCG+CD C+D  + +D  E A++ LS I+R  Q++GV HL
Sbjct: 369 EETRCRRQTLLAYFDEDMPQPCGHCDNCVDGVQTWDATEPARQGLSAIYRTGQRYGVGHL 428

Query: 438 IEVLRGSKAASVVDRGHDKLSTWGIGKEKSHEFWLSIIRQIIHLGFASQDITRGSAIKLN 497
           ++VL G     V   GH+KLS +G+GK ++   W S+ RQ++  G    DI     ++LN
Sbjct: 429 VDVLLGKDNEKVRSFGHEKLSVYGVGKARAEGEWRSLFRQMVARGLVDIDIEGYGGLRLN 488

Query: 498 PQARAVLKGELPLQLAEPRISITTHVKRRS-SSRAPINYDRKLFARLKQLRRSLAEELDV 556
              R +LKGE+ L+L       TT     S +S+     +R+ +  L+ LRR LA+E  V
Sbjct: 489 DSCRPLLKGEVSLELRRDLKPQTTAKSSTSQASQLVRGEEREQWEALRTLRRKLAQEHSV 548

Query: 557 PPYLVFNDATLAEMAAMLPTSPGEMLAVNGVGETKLNRFGGEFLD 601
           PPY++F D+TL EM    PTS  EM  V+GVG  KL R+G  FL+
Sbjct: 549 PPYVIFPDSTLLEMLREQPTSMAEMARVSGVGARKLERYGQAFLE 593