Pairwise Alignments

Query, 443 a.a., UDP-N-acetylmuramoylalanine--D-glutamate ligase (RefSeq) from Shewanella loihica PV-4

Subject, 438 a.a., UDP-N-acetylmuramoylalanine--D-glutamate ligase from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  357 bits (915), Expect = e-103
 Identities = 208/434 (47%), Positives = 279/434 (64%), Gaps = 25/434 (5%)

Query: 8   IVLGLGATGLSVVRYLIKQGITPLVMDSRENPPGRETLSQEFPEVLLLTGGFDCRYLVQA 67
           +++GLG TGLS V + + +G+TP VMD+R  PPG + L +    V   TG  +  +L+ A
Sbjct: 10  VIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEA---VERHTGSLNDEWLMAA 66

Query: 68  SQIVVSPGIPLDTAEVRAAVDMGIDIVGDVELFARALADRPACVIGITGSNGKSTVTTLV 127
             IV SPGI L    + AA D GI+IVGD+ELF R   +  A ++ ITGSNGKSTVTTLV
Sbjct: 67  DLIVASPGIALAHPSLSAAADAGIEIVGDIELFCR---EAQAPIVAITGSNGKSTVTTLV 123

Query: 128 GEMAAKAGLKVAVGGNIGVPVLDLLDGDHELFVLELSSFQLETTSSLNCISATCLNISED 187
           GEMA  AG+ V VGGNIG+P L LLD + EL+VLELSSFQLETTSSL  ++AT LN++ED
Sbjct: 124 GEMAKAAGVNVGVGGNIGLPALMLLDDECELYVLELSSFQLETTSSLQAVAATILNVTED 183

Query: 188 HMDRYS-DLESYRQAKLRLYDQTKLAIFNRDDLLTRP---------NEPMNQNSFGLSLP 237
           HMDRY   L+ YR AKLR+Y+  K+ + N DD LT P         +  +N   + L+  
Sbjct: 184 HMDRYPFGLQQYRAAKLRIYENAKVCVVNADDALTMPIRGADERCVSFGVNMGDYHLNHQ 243

Query: 238 EGDEWGVNHGVLVHGTTEYVAGAQVSLVGSHNQANLLVAMALADSAGVDKAAMVEVAKQF 297
           +G+ W    G  V    E      + L G HN  N L A+ALAD+AG+ +A+ ++    F
Sbjct: 244 QGETWLRVKGEKVLNVKE------MKLSGQHNYTNALAALALADAAGLPRASSLKALTTF 297

Query: 298 KGLAHRCELVGKHQGVSYVNDSKATNVGATIAALQGLSDHEGQIILIAGGDGKGADFSTL 357
            GL HR E+V +H GV ++NDSKATNVG+T AAL GL   +G + L+ GGDGK ADFS L
Sbjct: 298 TGLPHRFEVVLEHNGVRWINDSKATNVGSTEAALNGL-HVDGTLHLLLGGDGKSADFSPL 356

Query: 358 RGALLGVG-QVITLGKDGDRIAE-QFDGAIRVESMQEAVAQAAQLAKPGDLVLLSPACAS 415
              L G   ++   G+DG ++A  + + A + E+M++A+   A   +PGD+VLLSPACAS
Sbjct: 357 ARYLNGDNVRLYCFGRDGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLLSPACAS 416

Query: 416 LDMYANFMARGDDF 429
           LD + NF  RG++F
Sbjct: 417 LDQFKNFEQRGNEF 430