Pairwise Alignments

Query, 443 a.a., UDP-N-acetylmuramoylalanine--D-glutamate ligase (RefSeq) from Shewanella loihica PV-4

Subject, 461 a.a., UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  194 bits (494), Expect = 4e-54
 Identities = 163/466 (34%), Positives = 220/466 (47%), Gaps = 64/466 (13%)

Query: 9   VLGLGATGLSVVRYLIKQGITPLVMDSRENPPGRETLSQEFPEVLLLTGGFDCRYLVQA- 67
           V GLG +G++  R L   G  P++ D  E   GR     E         GF    L  A 
Sbjct: 14  VFGLGRSGITAARALQAGGAIPILWDDGE--AGRAQAKGE---------GFTVEDLAAAD 62

Query: 68  ----SQIVVSPGIPLDTAEVRAAVDM----GIDIVGDVELFARALADRPAC----VIGIT 115
               + +V+SPG PL        VD+    G+ +VGD+ELFARALA +P      V+ IT
Sbjct: 63  WSDFAALVLSPGAPLTHPRPHWTVDLARAAGVPVVGDIELFARALAAQPKDERPRVVAIT 122

Query: 116 GSNGKSTVTTLVGEMAAKAGLKVAVGGNIGVPVLDLLDGDHE-LFVLELSSFQLETTSSL 174
           G+NGKST T L+G +   AGL   VGGNIGV VL L +   + ++V+E+SS+QL+ T++ 
Sbjct: 123 GTNGKSTTTALIGWVLKSAGLTAHVGGNIGVGVLALPEPTPDAVYVIEVSSYQLDLTTTF 182

Query: 175 NCISATCLNISEDHMDRYSDLESYRQAKLRLY---DQTKLAIFNRDD------------- 218
               A   NIS DH+DR+  ++ Y  AK R++    +  +A+   DD             
Sbjct: 183 APDVAILTNISPDHLDRHGGMDGYVAAKARIFANQGRDDVALVGVDDSWGQGIARELSDR 242

Query: 219 ---LLTRPNEPMNQNSFGLSLPEGDEWGVNHGVLVHGTTEYVAGAQVSLVGSHNQANLLV 275
              + T P    +Q + G     G        +L +G       A  SL G HN  N   
Sbjct: 243 ATVISTHP----SQRAEGYVAQPG-------AILKNGERVADLTAARSLPGRHNAQNAAF 291

Query: 276 AMALADSAGVDKAAMVEVAKQFKGLAHRCELVGKHQGVSYVNDSKATNVGATIAALQGLS 335
           A   A   GV   A V     F GLAHR E VG+   V ++NDSKATN     AA Q L+
Sbjct: 292 AYGTAVRLGVSHDAAVSGLLSFPGLAHRMEAVGRLGSVRFINDSKATNAD---AARQALA 348

Query: 336 DHEGQIILIAGGDGKGADFSTLRGALLGVGQVITLGKDGDRIAEQFDGAIRV--ESMQEA 393
            +   +  IAGG  K    + L      + +   +G      AE       V   ++  A
Sbjct: 349 SYP-SVFWIAGGVPKAGGIADLADLFPRIAKAYLIGDAAPAFAEALADTPHVIARTLDAA 407

Query: 394 VAQA---AQLAKPGDLVLLSPACASLDMYANFMARGDDFRAQVEAL 436
           VA A   A  A    +VLLSPACAS D + +F ARG+ FRA V AL
Sbjct: 408 VAAAAADAAFAGGDQIVLLSPACASFDQFKDFEARGEAFRAAVLAL 453