Pairwise Alignments

Query, 857 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella loihica PV-4

Subject, 820 a.a., membrane protein from Pseudomonas simiae WCS417

 Score =  317 bits (811), Expect = 2e-90
 Identities = 203/555 (36%), Positives = 301/555 (54%), Gaps = 20/555 (3%)

Query: 303 QQKERSKITLEAIAEAVILTDSWAKVIYLNPQAERLLKVKAESAVGMNLDKVFRSEPELN 362
           Q+KER++ITLE+I + VI TD    + Y+NP AE L    +  A G+ L  +F    +  
Sbjct: 242 QEKERAQITLESIGDGVITTDVDGAITYMNPAAEALTHWNSAQAQGLPLAALFNLLDDNA 301

Query: 363 QSLFAFMASGTPTPMLSKVKFTSHTPRLMERS---ISNLKGP---NNKIIGTVIVLRDIT 416
           Q     +        LS     S T + ++ S   ++ +  P     K+ G V+VL D+T
Sbjct: 302 QPDGFTLIEHIVKGQLSGGSEHSKTIQRLDGSTVSVTLVGAPIRSTGKVTGAVLVLHDMT 361

Query: 417 QEELLKHQLRRRANFDNVTGLLNRCAFEERLQAFA-----EDAQTLAICYFDLEQFKLIN 471
           QE      L  +A  D +TGL NR  FE RL+        ++    A+ + DL+QFKL+N
Sbjct: 362 QERQYIANLSWQATHDALTGLANRREFEFRLEQVLHPTAQQNGGRHALMFLDLDQFKLVN 421

Query: 472 DSCGHNAGDAMLKMVAKAIQASLEGQGLLARLGGDEFGLALKDLGVVPLAQQVKQIINAV 531
           D+CGH AGD +L+ +   +Q+ L     LARLGGDEFG+ L++       +  + + + V
Sbjct: 422 DTCGHAAGDELLRHICALLQSDLREGDTLARLGGDEFGILLENCPAAVAEKIAESLRHTV 481

Query: 532 GKQVMEHHGCHYHVGISAG-VALARAPYINALEL-LKDADIACIAAKRKGSNQVHFYDDK 589
                   G  +   +S G V L   P    LE  L+ AD+AC  AK KG N+V  Y   
Sbjct: 482 QNLHFVWKGRPFMTTVSIGLVHLGHTP--TTLETSLRAADMACYMAKEKGRNRVQVYHAD 539

Query: 590 DKELTYQRNAPKWAVRIAQAIEHNELLLYYQPIKALGPQ--GKQRMEVLLRIQEPCGRIL 647
           D EL+ +     W  R+  A+E N   LY Q I  LG    G   +E+LLR+ +  GRI+
Sbjct: 540 DSELSLRFGEMAWVQRLHMALEENRFCLYAQEISPLGQTNGGDGHIEILLRLHDEAGRII 599

Query: 648 APAQFIAAAERFKLMTDVDKEVIRKTFLWLS--LHEELWADHCL-SINLSANSLGAEGMV 704
            P  FI AAER+ LMT +D+ V+   F  ++  + E       + +INLS  ++G +  +
Sbjct: 600 LPDSFIPAAERYGLMTSLDRWVVENVFKIINRCMQERPGLPMAMCAINLSGITIGDDDFL 659

Query: 705 DYIIAQLERFAIPSQCICFEITETSAIQNRNRAMEMLNQLKKQGFSFALDDFGTGFASYG 764
            ++  +   + IP   ICFEITETSAI N   A+  +N+LK  G  F+LDDF  G +S+ 
Sbjct: 660 GFLREKFHTYTIPPGMICFEITETSAIANLGSAIRFINELKALGCHFSLDDFCAGMSSFA 719

Query: 765 YLRELPVNYVKIDGCFIKSLASNAKDYAIVKSIHDVCRVMGIETVAEFVENQEIIERLKS 824
           YL+ LPV+++KIDG F+K +  +  + A+V+ I+ +  VMG  T+AEFVE  +I + L  
Sbjct: 720 YLKHLPVDFLKIDGSFVKDMLDDPINRAMVEVINHIGHVMGKRTIAEFVETPQIEQALLE 779

Query: 825 IGINYAQGYAIGRPK 839
           IG++YAQGY I RP+
Sbjct: 780 IGVDYAQGYLIERPQ 794