Pairwise Alignments

Query, 495 a.a., RNA polymerase factor sigma-54 (RefSeq) from Shewanella loihica PV-4

Subject, 505 a.a., RNA polymerase sigma-54 factor RpoN from Sphingobium sp. HT1-2

 Score =  271 bits (693), Expect = 4e-77
 Identities = 182/502 (36%), Positives = 269/502 (53%), Gaps = 26/502 (5%)

Query: 5   LQLKMGQHLTMTPQLQQAIRLLQLSSLELQQEIQQALESNPLLEL----DEEQESASIEL 60
           L ++  Q L MTPQLQQAI+LL LS+LE++  +   LE NPLLE     D  +E + ++ 
Sbjct: 7   LDIRQSQSLVMTPQLQQAIKLLALSNLEIEAFVAGELEKNPLLEQGAADDGGREGSGVDR 66

Query: 61  QDDGVTDSFDNKYDDKI------ELDSSQD-NSGVETSDALTQDSMPDELPVDTTWDEVY 113
           + +  T + +    D +        DS  D + G ET      D   D +   +    + 
Sbjct: 67  EVEAPTLAAETGASDDLIAQGLGGADSPLDVDHGAET---FIDDGPADRMGAGSGSGSLD 123

Query: 114 TASPNSSSGAMRDDDMPFQGETSEGLYEHLEWQKNLTPFSDNDLAIATAIIDAIDERGYL 173
                S SG   D D       +  L EHL  Q   T  S  DL IAT +I  I E GYL
Sbjct: 124 MLGGGSGSGEAVDFDS--FANAAPSLQEHLMDQARST-LSGMDLLIATQLIGQISEAGYL 180

Query: 174 TQTCEDILEAMGDPEIELDEVEAVLKRVQHFDPIGVAARDLSECLTIQLAQYSDDTPHIA 233
                     +G P   L  VEAVL+ +  FDP GV AR L+ECL +Q  + +   P I 
Sbjct: 181 EANLLQTAHGLGVP---LFTVEAVLEVIHSFDPTGVGARSLAECLALQAKEANRYDPCIQ 237

Query: 234 NARMLIKEHLDLIAGRDFRLLMRKTKLKEDELRDAIALIQTLNPRPGLAITASRDEYVIP 293
                +  +LDL+A      L R   + E++L D I  ++  +P+PGL   +     V P
Sbjct: 238 R----LLANLDLLAKGALPQLRRICGVDEEDLADMIRELRGYDPKPGLRFASDSATPVTP 293

Query: 294 DVTVTKKKGRWVVELNPDSMPKINVNQQY-AAMARSTKSQADGQFIRGHLQEAKWFLKSL 352
           D+ V++ +  W +E+N  ++P++ VN+ Y   +A   + +A   ++   L  A W +K+L
Sbjct: 294 DLFVSRTREGWGIEVNSATLPRVLVNRTYYVELAGGPQDKASKAWLADCLASANWLVKAL 353

Query: 353 ESRNETLLKVTNCIVDFQQGFFEFGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTP 412
           + R +T++KV + IV  Q+ FF  G   +KP+ L  +A+A+EMHEST+SRVT+ KY+  P
Sbjct: 354 DQRQKTIIKVASEIVRQQEDFFRNGVAYLKPLTLRAVADAIEMHESTVSRVTSNKYLSCP 413

Query: 413 RGIFELKYFFSSHVGTDDG-GECSSTAIRAFIKKLVAAENQKKPLSDSKMAQLLAEQGIK 471
           RG++ELKYFF+S V   DG G  S+ A+++ IK L+ AE     LSD  +  LL  +G+ 
Sbjct: 414 RGLYELKYFFTSGVAAADGDGAVSAEAVKSHIKALIGAEEAHAILSDDTLVDLLRAKGMD 473

Query: 472 VARRTIAKYREAMLIPPSNQRK 493
           +ARRT+AKYRE+M I  S QR+
Sbjct: 474 IARRTVAKYRESMGIGSSVQRR 495