Pairwise Alignments

Query, 495 a.a., RNA polymerase factor sigma-54 (RefSeq) from Shewanella loihica PV-4

Subject, 497 a.a., RNA polymerase sigma-54 factor from Pseudomonas putida KT2440

 Score =  548 bits (1411), Expect = e-160
 Identities = 292/501 (58%), Positives = 363/501 (72%), Gaps = 11/501 (2%)

Query: 1   MKASLQLKMGQHLTMTPQLQQAIRLLQLSSLELQQEIQQALESNPLLELDEEQESASIEL 60
           MK SL LKMGQ LTMTPQLQQAIRLLQLS+L+LQQEIQ+ALESNP+LE  E+ E      
Sbjct: 1   MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGEDFD--- 57

Query: 61  QDDGVTDSFDNKYDDKIELDSSQDN--SGVETSDALTQDSMPDELPVDTTWDEVYTASPN 118
             D + D+ +NK   +++ +S Q++  S     D    + +P+ELPVDT W+++Y  S  
Sbjct: 58  NSDPMADNAENKPAAEVQDNSFQESTVSADNLEDGEWSERIPNELPVDTAWEDIYQTSA- 116

Query: 119 SSSGAMRDDDMPFQGETSEG--LYEHLEWQKNLTPFSDNDLAIATAIIDAIDERGYLTQT 176
           SS  +  DD+  F   TS G  L  HL WQ NL P SD D  IA  +ID+I+ +GYL  T
Sbjct: 117 SSLPSNDDDEWDFTTRTSAGESLQSHLLWQLNLAPMSDTDRLIAVTLIDSINGQGYLEDT 176

Query: 177 CEDILEAMGDPE--IELDEVEAVLKRVQHFDPIGVAARDLSECLTIQLAQYSDDTPHIAN 234
            E+I     DPE  IELDEVEAVL R+Q F+P GV AR+L ECL +QL Q    TP +  
Sbjct: 177 LEEICAGF-DPELDIELDEVEAVLHRIQQFEPAGVGARNLGECLLLQLRQLPATTPWMTE 235

Query: 235 ARMLIKEHLDLIAGRDFRLLMRKTKLKEDELRDAIALIQTLNPRPGLAITASRDEYVIPD 294
           A+ L+ + +DL+  RD+  LMR+ K+KEDELR  I L+Q+LNPRPG  I +S  EYV+PD
Sbjct: 236 AKRLVTDFIDLLGSRDYSQLMRRMKIKEDELRQVIELVQSLNPRPGSQIESSEPEYVVPD 295

Query: 295 VTVTKKKGRWVVELNPDSMPKINVNQQYAAMARSTKSQADGQFIRGHLQEAKWFLKSLES 354
           V V K   RW+VELN +++P++ VN QYA   R   + AD  F+R  LQEA+WF+KSL+S
Sbjct: 296 VIVRKDSDRWLVELNQEAIPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQS 355

Query: 355 RNETLLKVTNCIVDFQQGFFEFGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRG 414
           RNETL+KV   IV+ Q+GF + G+EAMKP+VL+DIAEAV MHESTISRVTTQKYMHTPRG
Sbjct: 356 RNETLMKVATQIVEHQRGFLDHGDEAMKPLVLHDIAEAVGMHESTISRVTTQKYMHTPRG 415

Query: 415 IFELKYFFSSHVGTDDGGECSSTAIRAFIKKLVAAENQKKPLSDSKMAQLLAEQGIKVAR 474
           I+ELKYFFSSHV T +GGECSSTAIRA IKKLVAAENQKKPLSDSK+A LL  QGI+VAR
Sbjct: 416 IYELKYFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVAR 475

Query: 475 RTIAKYREAMLIPPSNQRKSL 495
           RT+AKYRE++ I PS++RK L
Sbjct: 476 RTVAKYRESLGIAPSSERKRL 496