Pairwise Alignments

Query, 495 a.a., RNA polymerase factor sigma-54 (RefSeq) from Shewanella loihica PV-4

Subject, 514 a.a., RNA polymerase sigma-54 factor from Agrobacterium fabrum C58

 Score =  299 bits (765), Expect = 2e-85
 Identities = 198/523 (37%), Positives = 288/523 (55%), Gaps = 53/523 (10%)

Query: 1   MKASLQLKMGQHLTMTPQLQQAIRLLQLSSLELQQEIQQALESNPLLEL----------- 49
           + ASL L+  Q L MTPQL Q+I+LLQ++  EL Q I Q +E NPLLE+           
Sbjct: 3   LSASLLLRQNQSLVMTPQLMQSIQLLQMTHFELTQFIAQEVERNPLLEIAANDGDLGSDT 62

Query: 50  --------DEEQESASIELQDDGVTDSFDNKYDDKI-----ELDSSQDNSGVETSDALTQ 96
                   D E   A++      VT   D+ Y ++      +LD+S +N   +  +    
Sbjct: 63  PVDVDNFGDAEASDAAVR-----VTPDSDDWYGERAANLGEQLDTSFENVFPDDGEPRKA 117

Query: 97  DSMPDELPVDTTWDEVYTASPNSSSGAMRD-DDMPFQGETSEGLYEHLEWQKNLTPFSDN 155
           D+ P+   + + W  +    P   SG   D DD        + L +HL  Q  L   +  
Sbjct: 118 DA-PE---LASQWKSM----PGQESGESYDLDDFV---AARQSLSDHLNQQLPLAISAAE 166

Query: 156 DLAIATAIIDAIDERGYLT-QTCEDILEAMGDPEIELDEVEAVLKRVQHFDPIGVAARDL 214
           D  IA A+I  +DE GY+     +D+ E +G        VE VLK +Q FDP G+ +R L
Sbjct: 167 DRMIADALIGQLDETGYIAADAVDDVAERLGATP---SAVEYVLKTLQGFDPPGIFSRSL 223

Query: 215 SECLTIQLAQYSDDTPHIANARMLIKEHLDLIAGRDFRLLMRKTKLKEDELRDAIALIQT 274
           SECL  QLAQ     P    A     ++L+L+A RDF  L +   + E++L D +A I+T
Sbjct: 224 SECLATQLAQKDRLDP----AMRAFVDNLELLAKRDFASLKKLCGVDEEDLLDMLAEIRT 279

Query: 275 LNPRPGLAITASRDEYVIPDVTVTKKK-GRWVVELNPDSMPKINVNQQYAAMARSTKSQA 333
           LNPRPG    +   E ++PD+ V     G W+VE+NPD++P++ +NQ Y A     K++A
Sbjct: 280 LNPRPGAGYDSMVSETIVPDIIVRPSSTGGWLVEINPDTLPRVLINQSYFAEVSKHKARA 339

Query: 334 --DGQFIRGHLQEAKWFLKSLESRNETLLKVTNCIVDFQQGFFEFGEEAMKPMVLNDIAE 391
             D  F+   +Q A W  +SL+ R  T++KV + IV  Q  F   G + ++P+ L  +A+
Sbjct: 340 GEDQDFLSECMQTAHWLTRSLDQRARTIMKVASEIVRQQDAFLINGVDQLRPLNLKTVAD 399

Query: 392 AVEMHESTISRVTTQKYMHTPRGIFELKYFFSSHVGTDDGGEC-SSTAIRAFIKKLVAAE 450
           A++MHEST+SRVT++KYM TPRG+FELKYFFS  +   +GG+  S+ A+R  IK ++A E
Sbjct: 400 AIKMHESTVSRVTSKKYMLTPRGLFELKYFFSVSISAVEGGDSHSAEAVRHRIKAMIAQE 459

Query: 451 NQKKPLSDSKMAQLLAEQGIKVARRTIAKYREAMLIPPSNQRK 493
             +  LSD  +   L + GI +ARRT+AKYREAM IP S QR+
Sbjct: 460 AAEAVLSDDDIVDNLKKTGIDIARRTVAKYREAMNIPSSVQRR 502