Pairwise Alignments

Query, 176 a.a., 2'-5' RNA ligase (RefSeq) from Shewanella loihica PV-4

Subject, 179 a.a., RNA 2',3'-cyclic phosphodiesterase from Erwinia tracheiphila SCR3

 Score = 69.3 bits (168), Expect = 3e-17
 Identities = 60/175 (34%), Positives = 82/175 (46%), Gaps = 10/175 (5%)

Query: 2   KRLFLAIA-PDAAQLEQLTQLQASLDGE-GRLVPRDNLHMTLAFLGQCSEAQQEALSESL 59
           KRLF AI+ P+ +    +     S   E GR +   NLH+TLAF G  S  +  AL    
Sbjct: 5   KRLFFAISLPEESSTRIVAWRAQSFAREAGRPIASANLHLTLAFPGDVSHERSLALQ--- 61

Query: 60  ARLAHQRRLPTFEVTLNTLEHWVKPKILCLKGAARDP-GLISLFNQCQRLAQQLGLHTSE 118
            RLA + + P F +TL+   HW +  I+ L G  R P GL+ L    +  A + G + S 
Sbjct: 62  -RLAAKIKQPGFVLTLDDAGHWPRSGIVWL-GPKRSPRGLLQLAEMLRAQAARCGCYQSP 119

Query: 119 HSFTPHITLMRKAKMLPELKAPSLSLSGHA--LHLYHSQSSEQGVLYKVLASWPL 171
             F PHITL+R A     L   +   S +     L+ S       +YK LA W L
Sbjct: 120 GPFHPHITLLRNAIRPVALPPRNFHWSFYVERFSLFESVFPRGHTVYKALAEWNL 174