Pairwise Alignments

Query, 176 a.a., 2'-5' RNA ligase (RefSeq) from Shewanella loihica PV-4

Subject, 176 a.a., RNA 2',3'-cyclic phosphodiesterase from Escherichia coli ECRC100

 Score = 79.7 bits (195), Expect = 2e-20
 Identities = 62/176 (35%), Positives = 86/176 (48%), Gaps = 10/176 (5%)

Query: 2   KRLFLAIAPDAAQLEQLTQLQAS---LDGEGRLVPRDNLHMTLAFLGQCSEAQQEALSES 58
           +RLF AI   A   EQ+   +A+   L+  GR V  DNLH+TLAFLG+ S  +++ALS  
Sbjct: 5   QRLFFAIDLPAEIREQIIHWRATHFPLEA-GRPVAADNLHLTLAFLGEVSAEKEKALS-- 61

Query: 59  LARLAHQRRLPTFEVTLNTLEHWVKPKILCLKGAARDPGLISLFNQCQRLAQQLGLHTSE 118
              LA + R P F +TL+    W++ +++ L       GLI L N  +  A + G   S 
Sbjct: 62  --LLAGRIRQPGFTLTLDDAGQWLRSRVVWLGMRQPPRGLIQLANMLRSQAARSGCFQSN 119

Query: 119 HSFTPHITLMRKAKMLPELKAPSLSLSGHALH--LYHSQSSEQGVLYKVLASWPLT 172
             F PHITL+R A     +  P  + S       LY S  +     Y  L  W LT
Sbjct: 120 RPFHPHITLLRDASEAVTIPPPGFNWSYAVTEFTLYASSFARGRTRYTPLKRWVLT 175