Pairwise Alignments

Query, 176 a.a., 2'-5' RNA ligase (RefSeq) from Shewanella loihica PV-4

Subject, 176 a.a., RNA 2',3'-cyclic phosphodiesterase from Escherichia fergusonii Becca

 Score = 80.1 bits (196), Expect = 2e-20
 Identities = 61/175 (34%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 2   KRLFLAIAPDAAQLEQLTQLQASL--DGEGRLVPRDNLHMTLAFLGQCSEAQQEALSESL 59
           +RLF AI   A   EQ+   +A+      GR V  DNLH+TLAFLG+ S  +++ALS   
Sbjct: 5   QRLFFAIDLPAEIREQIIHWRATHFPPEAGRPVAADNLHLTLAFLGEVSAEKEKALS--- 61

Query: 60  ARLAHQRRLPTFEVTLNTLEHWVKPKILCLKGAARDPGLISLFNQCQRLAQQLGLHTSEH 119
             LA + R P F +TL+    W++ +++ L       GLI L N  +  A + G   S  
Sbjct: 62  -LLAGRIRQPGFTLTLDDAGQWLRSRVVWLGMRQPPRGLIQLANMLRSQAARSGCFQSNR 120

Query: 120 SFTPHITLMRKAKMLPELKAPSLSLSGHALH--LYHSQSSEQGVLYKVLASWPLT 172
            F PHITL+R A     +  P  + S       LY S  +     Y  L  W LT
Sbjct: 121 PFHPHITLLRDASEAVTIPPPGFNWSYTVTEFTLYASSFARGRTRYTPLKRWALT 175