Pairwise Alignments

Query, 789 a.a., penicillin-binding protein 1B (RefSeq) from Shewanella loihica PV-4

Subject, 844 a.a., Penicillin-binding protein 1B from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  570 bits (1470), Expect = e-167
 Identities = 312/730 (42%), Positives = 437/730 (59%), Gaps = 13/730 (1%)

Query: 33  KSTATARPGWGRRIWS-LSWKLGLILFAAMTIYSIYLDQIIARKFEGQKWHLPAQVFSRS 91
           K     R   G+R W  L  KL ++    + IY +YLDQ I  + +G+ W LPA V+ R 
Sbjct: 51  KGKGKGRKPRGKRGWLWLLLKLAIVFAVLIAIYGVYLDQKIRSRIDGKVWQLPAAVYGRM 110

Query: 92  MALYPGAAVSHDQLIAELKLLGYRKVANPRQVGEFSASKTKVDLWRRPFLHPQGSQEAQR 151
           + L P   +S ++++  L+   YR+V+   + GEF+     +++ RRPF  P   +   R
Sbjct: 111 VNLEPDMTISKNEMVKLLEATQYRQVSKMTRPGEFTVQANSIEMIRRPFDFPDSKEGQVR 170

Query: 152 MMISFDSQGVASVARSSDHRELAVFHLEPVLLDRMITGDGEDRLFVATDKIPKAIVDALI 211
             ++FD   +A++    ++R+   F L+P L+  + + +GE RLFV     P  +VD L+
Sbjct: 171 ARLTFDGDHLATIVNMENNRQFGFFRLDPRLITMISSPNGEQRLFVPRSGFPDLLVDTLL 230

Query: 212 LVEDRSFYEHHGVNPFAIIRAAMVNISAGRTVQGGSTLTQQLAKNFFLSSERSIIRKLRE 271
             EDR FYEH G++ ++I RA + N++AGRTVQG STLTQQL KN FLSSERS  RK  E
Sbjct: 231 ATEDRHFYEHDGISLYSIGRAVLANLTAGRTVQGASTLTQQLVKNLFLSSERSYWRKANE 290

Query: 272 ALMAIIIDFRYDKDEILEAYLNEVYMGQDKSRAVHGMGLASQFYFGRPIAELTLPQQAFL 331
           A MA+I+D RY KD ILE Y+NEVY+GQ     + G  LAS +YFGRP+ EL+L QQA L
Sbjct: 291 AYMALIMDARYSKDRILELYMNEVYLGQSGDNEIRGFPLASLYYFGRPVEELSLDQQALL 350

Query: 332 VAAIKGPSYYNPWRFPERAQERRDLVLRLLMESGQLPVAQYKAAVESPLGVRKASKPVHQ 391
           V  +KG S YNPWR P+ A ERR+LVLRLL +   +    Y      PLGV+     +  
Sbjct: 351 VGMVKGASIYNPWRNPKLALERRNLVLRLLQQQQIIDQELYDMLSARPLGVQPRGGVISP 410

Query: 392 KLPAFFAVVRGELSRRFGDSLLQQSGIKVYTTLDPLAQEAAEQAVRSTMKNLEQRDKA-- 449
           + PAF  +VR EL  + GD +   SG+K++TT D +AQ+AAE+A    +  L+++ K   
Sbjct: 411 Q-PAFMQLVRQELQAKLGDKVKDLSGVKIFTTFDSVAQDAAEKAAVEGIPALKKQRKLSD 469

Query: 450 LQVGMVVTDKYSAGIAAMVGDKVPSYQGFNRAVEIRRPIGSLIKPFVYATALTHGDKYTL 509
           L+  +VV D++S  + AMVG   P + G+NRA++ RR IGSL KP  Y TAL+    Y L
Sbjct: 470 LETAIVVVDRFSGEVRAMVGGSEPQFAGYNRAMQARRSIGSLAKPATYLTALSQPKIYRL 529

Query: 510 ATPLKDEPITLTNSQGKTWSPQNVNKQF--SGEVPLMTAFKKSMNVPTVNLGMAIGTDAV 567
            T + D PI L    G+ WSPQN ++++  SG V L+ A  +SMNVPTVNLGMA+G  AV
Sbjct: 530 NTWIADAPIALRQPNGQVWSPQNDDRRYSESGRVMLVDALTRSMNVPTVNLGMALGLPAV 589

Query: 568 ATTLAKSGW-DETIPEYPSMLLGAVNGSPLMVAQVYQTLADNGRYRQLNAVTHVLDADNQ 626
             T  K G   + +   P+MLLGA+N +P+ VAQ +QT+A  G    L+A+  V+  D +
Sbjct: 590 TETWIKLGVPKDQLHPVPAMLLGALNLTPIEVAQAFQTIASGGNRAPLSALRSVIAEDGK 649

Query: 627 PLSASQRGADQAISVASDFLVQHAMTQVVQSGTATKLGQAFPGVTLAGKTGTSNDSRDSW 686
            L  S   A++A+   + +L    M QVVQ GT  +LG  +P + LAGKTGT+N++ D+W
Sbjct: 650 VLYQSFPQAERAVPAQAAYLTLWTMQQVVQRGTGRQLGAKYPNLHLAGKTGTTNNNVDTW 709

Query: 687 FAGFDERNVAAVWVGLDDNGKTSLYGSSGAMAVYQAFLKQRAPISLRRTPVNGVVSGYFD 746
           FAG D   V   WVG D+N  T LYG+SGAM++YQ +L  + P  L   P   +      
Sbjct: 710 FAGIDGSTVTITWVGRDNNQPTKLYGASGAMSIYQRYLANQTPTPLNLVPPEDI------ 763

Query: 747 AKTGVAKQGN 756
           A  GV   GN
Sbjct: 764 ADMGVDYDGN 773