Pairwise Alignments

Query, 462 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

Subject, 442 a.a., Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake from Pseudomonas fluorescens GW456-L13

 Score =  178 bits (452), Expect = 3e-49
 Identities = 117/422 (27%), Positives = 203/422 (48%), Gaps = 23/422 (5%)

Query: 39  SRQVLNRLQVGDYALVLLDLTMPFHSGEELLGMIRAEHPNTRVIIVTGVNEVDTAVRCIK 98
           + + L R+      +V+ D+ +P   G ELL  ++    +  V+++TG  ++  AV  ++
Sbjct: 37  AEEALERVGDNFAGIVVSDIRLPGIDGLELLTRLKERDRSLPVVLITGHGDISMAVGAMQ 96

Query: 99  HGAYDYFIKTDNVSDLAHTVRRALEVVGLERNYLHIKERFLSRTLDNPKAFNNILTCEPV 158
            GAYD+  K  +   L    RRALE   L R    ++ +   R          I+   P 
Sbjct: 97  KGAYDFMEKPFSPERLVDVARRALEQRSLAREVSSLRRQLAERD----SLEGRIIGRSPA 152

Query: 159 LLDQFRYLEAVAFSPEPLLIHGESGTGKSEFARSCHQLFSPE-QPFVSLNLAGINSDTFE 217
           + +    +  VA +   +LI GE+GTGK   AR  H       + FV+LN  G+  + FE
Sbjct: 153 MQNLRELIANVADTSANVLIEGETGTGKELVARCLHDFSRRHTKQFVALNCGGLPENLFE 212

Query: 218 LKLCGRLSHKPNGEVDAVTGMLHQAGSGVLYLSEIGALPLSAQITLLELIESRSYSPQGS 277
            ++ G  ++   G      G +  A  G L+L E+ ++PL  QI LL +++ R+    GS
Sbjct: 213 SEIFGHEANAFTGAGKRRIGKIEHADGGTLFLDEVESMPLPLQIKLLRVLQERTLERLGS 272

Query: 278 DSRFPIKCKFVVSTQDDLLTLNKAGEFRSDLLYRLRAHKIRLPRLAERPLDIAMLINHFI 337
           +    + C+ + +T+ DL+  +KAGEFRSDL YRL    + LP L ER  DI  L  HF+
Sbjct: 273 NQSVAVDCRVIAATKSDLVESSKAGEFRSDLYYRLNVVTLELPPLRERREDILQLFEHFL 332

Query: 338 AEAAEEMSLSAPQQPRDLAPKLLDYDFPGNLNELKGMVFDAVSRSDGVTLNISPFMEAIK 397
            +++     + P+        L+ +D+PGN+ EL+ +                 F   + 
Sbjct: 333 QQSSLRFDRTVPELDNQTVSNLMSHDWPGNVRELRNVA--------------ERFALGLP 378

Query: 398 EHKSLDAAPGDH-IIFPKSLPTLAQMNQALIDEAMSRTANNQTAAAQILGISQSALSRRL 456
             K   A+ G+  + F +++       + L+ +A+ R+  N T A+Q LG++++ L  ++
Sbjct: 379 AFKKTGASGGNQGLAFAEAVEA---FERNLLSDALQRSGGNLTQASQELGMAKTTLFDKV 435

Query: 457 TK 458
            K
Sbjct: 436 KK 437