Pairwise Alignments

Query, 462 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

Subject, 442 a.a., Helix-turn-helix, Fis-type from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score =  181 bits (460), Expect = 3e-50
 Identities = 117/423 (27%), Positives = 207/423 (48%), Gaps = 25/423 (5%)

Query: 39  SRQVLNRLQVGDYALVLLDLTMPFHSGEELLGMIRAEHPNTRVIIVTGVNEVDTAVRCIK 98
           + + L R+      +V+ D+ +P   G ELL  ++A   +  V+++TG  ++  AV  ++
Sbjct: 39  AEEALKRIDDNFAGIVISDIRLPGIDGLELLSRLKARDSSLPVVLITGHGDITMAVNAMR 98

Query: 99  HGAYDYFIKTDNVSDLAHTVRRALEVVGLERNYLHIKERFLSRTLDNPKAFNNILTCEPV 158
            GAYD+  K  +   L    RRALE  GL R    ++++   R          I+   P 
Sbjct: 99  DGAYDFMEKPFSPERLVDVTRRALEQRGLAREVWALRKQLAERD----SLEGRIIGRSPA 154

Query: 159 LLDQFRYLEAVAFSPEPLLIHGESGTGKSEFARSCHQLFS-PEQPFVSLNLAGINSDTFE 217
           + +    +  VA +   +LI GE+GTGK   AR  H      +  FV+LN  G+    FE
Sbjct: 155 MQNLRALIANVADTSANVLIEGETGTGKELVARCLHDFSRRKDSQFVALNCGGLAESLFE 214

Query: 218 LKLCGRLSHKPNGEVDAVTGMLHQAGSGVLYLSEIGALPLSAQITLLELIESRSYSPQGS 277
            ++ G  ++   G      G +  A +G L+L E+ ++P++ QI LL +++ R+    GS
Sbjct: 215 SEIFGHEANAFTGAGKRRIGKIEHAHNGTLFLDEVESMPVNLQIKLLRVLQERTLERLGS 274

Query: 278 DSRFPIKCKFVVSTQDDLLTLNKAGEFRSDLLYRLRAHKIRLPRLAERPLDIAMLINHFI 337
           +    + C+ + +T+ DL  L K  +FRSDL YRL    + LP L ER  DI  L  HF+
Sbjct: 275 NQSVAVDCRVIAATKSDLNALGKTNQFRSDLYYRLNVVTLELPPLRERREDILQLFEHFL 334

Query: 338 AEAAEEMSLSAPQQPRDLAPKLLDYDFPGNLNELKGMVFDAVSRSDGVTLNISPFMEA-- 395
             ++       P   R  +  L+ +D+PGN+ EL+ +       ++   L +  F ++  
Sbjct: 335 QLSSLRFDREPPVLDRQTSSNLMSHDWPGNVRELRNV-------AERFALGLPAFKQSGT 387

Query: 396 IKEHKSLDAAPGDHIIFPKSLPTLAQMNQALIDEAMSRTANNQTAAAQILGISQSALSRR 455
           + E++SL  A             +    ++L+ +A+ R+  N + A+Q LG++++ L  +
Sbjct: 388 VSENQSLGFA-----------EAVEAFERSLLGDALQRSGGNLSQASQELGMAKTTLFDK 436

Query: 456 LTK 458
           + K
Sbjct: 437 VKK 439