Pairwise Alignments

Query, 462 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

Subject, 442 a.a., C4-dicarboxylate transport transcriptional regulatory protein from Pseudomonas putida KT2440

 Score =  192 bits (487), Expect = 2e-53
 Identities = 123/422 (29%), Positives = 212/422 (50%), Gaps = 23/422 (5%)

Query: 39  SRQVLNRLQVGDYALVLLDLTMPFHSGEELLGMIRAEHPNTRVIIVTGVNEVDTAVRCIK 98
           + Q L R+      +V+ D+ +P   G ELL  ++A   +  V+++TG  ++D AV  ++
Sbjct: 38  AEQALERIGDDFAGIVVSDIRLPGIDGLELLNRLKARDRSLPVVLITGHGDIDMAVGAMR 97

Query: 99  HGAYDYFIKTDNVSDLAHTVRRALEVVGLERNYLHIKERFLSRTLDNPKAFNNILTCEPV 158
           +GAYD+  K  +   L   VRRALE  GL R  + ++ +   ++         I+   P 
Sbjct: 98  NGAYDFMEKPFSPERLVDVVRRALEQRGLSREVVALRRQLAEQS----SLEGRIIGRSPA 153

Query: 159 LLDQFRYLEAVAFSPEPLLIHGESGTGKSEFARSCHQLFSPEQ--PFVSLNLAGINSDTF 216
           +      +  VA +   +LI GE+GTGK   AR  H  FS  Q  PFV+LN  G+  + F
Sbjct: 154 MEHLRELIANVADTSANVLIEGETGTGKELVARCLHD-FSRRQSHPFVALNCGGLPENLF 212

Query: 217 ELKLCGRLSHKPNGEVDAVTGMLHQAGSGVLYLSEIGALPLSAQITLLELIESRSYSPQG 276
           E ++ G  ++   G      G +  A  G L+L E+ ++P++ QI LL +++ R+    G
Sbjct: 213 ESEIFGHEANAFTGAGKRRIGKIEHANGGTLFLDEVESMPINLQIKLLRVLQERTLERLG 272

Query: 277 SDSRFPIKCKFVVSTQDDLLTLNKAGEFRSDLLYRLRAHKIRLPRLAERPLDIAMLINHF 336
           S+   P+ C+ + +T+ DL  L ++G+FRSDL YRL    + LP L ER  DI  L  HF
Sbjct: 273 SNQSIPVDCRVIAATKADLDALGQSGQFRSDLYYRLNVVTLELPPLRERREDILQLFEHF 332

Query: 337 IAEAAEEMSLSAPQQPRDLAPKLLDYDFPGNLNELKGMVFDAVSRSDGVTLNISPFMEAI 396
           + ++A       P        +L+ +D+PGN+ EL+ +       ++   L +  F    
Sbjct: 333 LQQSALRFDRETPTLDSQTLSRLMAHDWPGNVRELRNV-------AERYALGLPAF---- 381

Query: 397 KEHKSLDAAPGDHIIFPKSLPTLAQMNQALIDEAMSRTANNQTAAAQILGISQSALSRRL 456
              K         ++F +++       + L+ +A+ RT  N + A+Q LG++++ L  ++
Sbjct: 382 --KKGPSGGANQGLLFAEAVEA---FERNLLTDALQRTGGNLSQASQELGMAKTTLFDKV 436

Query: 457 TK 458
            K
Sbjct: 437 KK 438