Pairwise Alignments

Query, 462 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

Subject, 448 a.a., Alginate biosynthesis transcriptional regulatory protein AlgB from Pseudomonas putida KT2440

 Score =  164 bits (415), Expect = 6e-45
 Identities = 135/450 (30%), Positives = 205/450 (45%), Gaps = 19/450 (4%)

Query: 7   ILLVDDEASWLRTLAVTLNRLVPEAEIDTCVDSRQVLNRLQVGDYALVLLDLTMPFHSGE 66
           ILLVDDE++ LRT    L        + T   + Q    LQ   + L  LDL +   +G 
Sbjct: 11  ILLVDDESAILRTFRYCLED--EGYSVATANSAAQAETLLQRQVFDLCFLDLRLGEDNGL 68

Query: 67  ELLGMIRAEHPNTRVIIVTGVNEVDTAVRCIKHGAYDYFIKTDNVSDLAHTVRRALEVVG 126
           ++L  +R + P  RV+IVT  + +DTAV  I+ GA DY +K  +   L     + LEV  
Sbjct: 69  DVLAQMRIQAPWMRVVIVTAHSAIDTAVDAIQAGAADYLVKPCSPDQLRLATAKQLEV-- 126

Query: 127 LERNYLHIKERFLSRTLDNPKAFNNILTCEPVLLDQFRYLEAVAFSPEPLLIHGESGTGK 186
                L  +   L   +  PK  + + +  P ++        VA +   +LI GESGTGK
Sbjct: 127 ---RQLSARLEALEGEIRKPK--DGLDSHSPAMMAVLETARQVAITDANILILGESGTGK 181

Query: 187 SEFARSCHQLFS-PEQPFVSLNLAGINSDTFELKLCGRLSHKPNGEVDAVTGMLHQAGSG 245
            E AR+ H       +  V++N   +N++  E +L G       G  ++  G + QA  G
Sbjct: 182 GELARAIHGWSKRARKACVTINCPSLNAELMESELFGHTRGAFTGASESTLGRVSQADGG 241

Query: 246 VLYLSEIGALPLSAQITLLELIESRSYSPQGSDSRFPIKCKFVVSTQDDLLTLNKAGEFR 305
            L+L EIG  PL+ Q  LL  I+ + Y   G         + + +T  +L  + +   FR
Sbjct: 242 TLFLDEIGDFPLTLQPKLLRFIQDKEYERVGDPVTRRADVRILAATNLNLEEMVRESRFR 301

Query: 306 SDLLYRLRAHKIRLPRLAERPLDIAMLINHFIAEAAEEMSLSAPQQPRDLAPKLLDYDFP 365
            DLLYRL    + LP L ER  DI +L + F+A   +E S  A     +    LL+Y +P
Sbjct: 302 EDLLYRLNVITLHLPPLRERSEDILILADRFLARFVKEYSRPARGFSDEARTALLNYRWP 361

Query: 366 GNLNELKGMVFDAVSRSDGVTLNISPFMEAIKEHKSLDAAPGDHIIFPKSLPTLAQMNQA 425
           GN+ EL+ +V  A          I P       H  +   P        +  +L ++ +A
Sbjct: 362 GNIRELRNVVERASI--------ICPQERVEISHLGMGEQPAGSAPRVGAALSLDELERA 413

Query: 426 LIDEAMSRTANNQTAAAQILGISQSALSRR 455
            I  A+   ++    AA+ LGI  S L R+
Sbjct: 414 HIG-AVLAASDTLDQAAKTLGIDASTLYRK 442