Pairwise Alignments

Query, 531 a.a., AMP-dependent synthetase and ligase (RefSeq) from Shewanella loihica PV-4

Subject, 570 a.a., long-chain-fatty-acid-CoA-ligase from Agrobacterium fabrum C58

 Score =  453 bits (1166), Expect = e-132
 Identities = 251/537 (46%), Positives = 337/537 (62%), Gaps = 26/537 (4%)

Query: 15  ASLIDLIETAAERYGDKTAYVCLGKASSFADIERDSRYFAAYLQQHTQLEVGDKVAIQLP 74
           ASLIDL+E + +++ D+ A+  +GK+ ++ +++ D+R  AA+LQ    LE GD+VA+ +P
Sbjct: 36  ASLIDLLEKSCKQFADRKAFSSMGKSLTYRELDADTRAVAAWLQSRG-LEKGDRVAVMMP 94

Query: 75  NITQFVIAAYGALRAGMILVNTNPLYTQRELIHQYRDSDAKALVVLSDLLPTLETVIPET 134
           NI Q  +A YG LRAGM++VN NPLYT REL HQ +DS AKAL VL +     +  +P+T
Sbjct: 95  NILQNPVAVYGILRAGMVVVNVNPLYTPRELEHQLKDSGAKALFVLENFAHVAQQAVPKT 154

Query: 135 QIETVISTHPLDLIATQPQADSQL---------AH-----IGFNQVLALGSQAEYRPVEV 180
            +  V+     DL+  +    + +         AH     I F  +L  G     +PV +
Sbjct: 155 AVRHVVVAAMGDLLGLKGHIVNLVVRKVKKLVPAHAIPGSISFKAMLKEGQGVSLKPVGL 214

Query: 181 AQQSLAALQYTGGTTGLSKGAMLSHSNLLANMLQVQSRLASKF---VEGEEI--FIAPLP 235
             Q +A LQYTGGTTG+SKGA+L+H+NLLAN  Q+   L + F    +  E+  FI  LP
Sbjct: 215 TAQDIAFLQYTGGTTGVSKGAVLTHANLLANKAQISLWLDAAFNGRKDRPEVLNFICALP 274

Query: 236 IYHIYAFMVNFVY-FEQGGCSVLIPNPRDISALIQTMSQHPFTGFAGLNTLFVGLCHQQS 294
           +YHI+A  VN +     GG ++LI NPRDI   ++ +S +    F GL TLF  L + + 
Sbjct: 275 LYHIFALTVNSLMGIALGGHNLLIANPRDIPGFVKELSHYQPHIFPGLTTLFNALMNNEE 334

Query: 295 FQALDFSHLKITISGGTALTQAAASIWQSTTGCTISEGYGLSETSPVVSLNA-PGLECLG 353
           F+ LD S L   + GG A+ +  A  W S  GC I+EGYGLSETSPV ++N     E  G
Sbjct: 335 FRKLDLSSLIFVLGGGMAVQRPVAERWVSVVGCPITEGYGLSETSPVATVNRLDAAEFSG 394

Query: 354 TIGRPVIDTQVKILDASEQEVPQGEIGELAVKGPQVMSGYWQKPEETAKVMTSDGFFKTG 413
           TIG P+  T++ I D     +P GE+GE+ ++GPQVM+GYWQ+P+ETAK +T+DGFF++G
Sbjct: 395 TIGLPISSTEIDIRDEDGNSLPTGEVGEICIRGPQVMAGYWQRPDETAKAITADGFFRSG 454

Query: 414 DIALATEDGMHKIVDRKKDMIIVSGFNVYPNEVEDVLAAHESVLECAVIGVDDSRSGEAV 473
           D+    E G  KIVDRKKDMI+VSGFNVYPNEVE+V A+H  VLECA IGV D  SGE V
Sbjct: 455 DMGFMDERGYTKIVDRKKDMILVSGFNVYPNEVEEVAASHPGVLECAAIGVPDEHSGETV 514

Query: 474 KAAIVLREPELANDATKQALLEHCRAQLAAYKLPKIIEFMPALPKSTVGKILRRELR 530
           K  +V ++  L    T+  L   C   L  YK PKIIEF   LPKS VGKILRRELR
Sbjct: 515 KLFVVKKDQSL----TEAELKAFCAKNLTNYKRPKIIEFRTDLPKSNVGKILRRELR 567