Pairwise Alignments

Query, 359 a.a., DNA polymerase IV (RefSeq) from Shewanella loihica PV-4

Subject, 433 a.a., DNA polymerase IV from Xanthobacter sp. DMC5

 Score =  192 bits (487), Expect = 2e-53
 Identities = 127/336 (37%), Positives = 174/336 (51%), Gaps = 8/336 (2%)

Query: 4   IIHVDMDCFFAAVEMRDFPELRGKPIAVGGRSDRRGVISTCNYEARKFGVRSAMASAYAL 63
           + HVD D F+AAVE RD P+L   P+ +GG   +RGV+ST  Y AR  GVRSAM    AL
Sbjct: 44  VAHVDCDAFYAAVEKRDNPDLAHVPLIIGG--GKRGVVSTACYIARIHGVRSAMPMFKAL 101

Query: 64  KLCPDLILVPGRMSVYKEVSAQIREVFARYTELIEPLSLDEAYLDVSDCTQ-HQGSATLI 122
            LCPD +++   M  Y +V  ++R      T L+EPLS+DEA+LD+S     HQ S    
Sbjct: 102 ALCPDAVVLKPNMEKYVKVGREVRARMKALTPLVEPLSIDEAFLDLSGTEALHQASPART 161

Query: 123 AEAIRREIFEVTGLTASAGIAPVKFLAKIASDLNKPNGQYVITPQMIPEFVKTLALIKIP 182
                R++    G+T S G+A  KFLAKIASDL+KP G  VI      EF+    +  I 
Sbjct: 162 LARFARDVEREVGITVSVGLAANKFLAKIASDLDKPRGFSVIGQSEAAEFLAPRPVTFIW 221

Query: 183 GVGKVTAAKLETMGLITCADVQACSRQSLMERFGKFGGVLYDRAQGIDPRGISPHRERKS 242
           GVG     KL   G  T  D+Q      L  R+G  G  L   A G+D R + P RE KS
Sbjct: 222 GVGAAFGGKLARDGFSTIGDLQRAEPADLARRYGAEGLRLSRLAFGLDTRKVEPEREAKS 281

Query: 243 VGVETTLAKDIYTYEQCQAVMPQLIQELSGRISRSAKSRRIHKQVVKLKFDDFKQTTIEQ 302
           V  ETT  +DI      +  +  L +E+S R+ R+  + R     +KLK  DF+  T  +
Sbjct: 282 VSAETTFDRDIGALRPLEQTLYALSEEVSERLKRAGIAGR--SVTLKLKSADFRLRTRSR 339

Query: 303 RSDE---VSVKLFYDLLKQALERRAGRGIRLLGVSV 335
             D    ++ ++     +  ++   G   RL+GV V
Sbjct: 340 TLDAPTCLAARINAAAHELLVKETDGTLFRLIGVGV 375